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Query: PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGEVDSIWLTRDGGNLRAIGNIRVELDGQTVLDTPVQSLVDGQLGAPFVWPLVANAGESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRIEFDGRTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMPFARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPTILGQDWPFADEQGRGKFVGVSQTIRGQRTRTAFSDNAPYFLEGAERVYTDGAASPQWYGTGTEDLYEGGWYFKDGTHFSDPLNGQPDQRTATAGCADYCVAVYRIMPAEAIGYHSALRFGIEHGKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPLLast
1 -173.000PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali  100  1MTMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGEVDSIWLTRDGGNLRAIGNIRVELDGQTVLDTPVQSLVDGQLGAPFVWPLVANAGESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRIEFDGRTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMPFARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPTILGQDWPFADEQGRGKFVGVSQTIRGQRTRTAFSDNAPYFLEGAERVYTDGAASPQWYGTGTEDLYEGGWYFKDGTHFSDPLNGQPDQRTATAGCADYCVAVYRIMPAEAIGYHSALRFGIEHGKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPL 559
2 -7.250PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  1MTLLGDKTASPYDTGT-------------------------VPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLKL--HGEYQGSGFTEPKYIARRGDGQVVQLSRLLHLVASSVDGSRDIETI................................................................................................................................................................................................................................................................................................................................................................................................................................................ 101
3 -5.970HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  10  1........................MKKLLLAMIAVAALISFAACDHNETYADQRDRELDSINAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVINDGCG---------DYIAKGKTQNVLCRFTEYCLANRAKICFVDIKKSLLANTYNSSYYGTVSATVPSGWLIPFTAHVRLLVPHTACLYDIRFQ............................................................................................................................................................................................................................................................................................................................................................ 235
4 -5.460PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  1MCTTNAVNEKISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYNASRGEIFEGSRNLKATMSRPSGDAPWNWEFSNEGKPLRVIAYYPAIAGTENFTDGIPFDFTQTNNPQQKEIL-------YNTNTSYTIPSSGGSDKVTIPLKFQHAYWIS---------IKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYDFLVPAFMDRNVKDDDLVFTLIIDGKK-------------EIFSLGREHLNNDGDTYGFKQGYANTYNVEFNNSLNMRLLN......................................................................................................................................................................................................... 352
5 -5.230PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  15  1.......................MKKVLVALTMVMGMGSAVAFAQEPVKLPAMEQNQQTSQDKFTKITELPTLSKDYEGTIVKEAFVAEKENGKVYKIIVTAIKEDQSTEEITVLLNEKG....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 104
6 -4.390PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  1...................MKIERLFIYCLLAGTSLLASCN-SEDMTDNPVETLSEGMYPLTFTAMQGEVV----------ATPQTRVSDYDDTDGKHKSK-------DGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVPNTSLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLKFR---------VKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPSNNFVKIEVYGLTYYYNPDIELVKGTVYTYT........................................................................................................................................................................................................................................................................... 259
7 -3.830PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  1.........................MKTKLVAVIALIFCAFMAEASKVEGNGNIITKEISVDNYSEIE-------------GGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITID-ENLFPLLSIKS------NNGRLAIRIQDGTRIK--------------------------PTQYVIEGSSKTLKYLKTSGPMD-------------------------------FEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADE............................................................................................................................................................................................................................................................... 203
8 -3.820PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  12  1...................MKKTIF-YSLFSALFMLTSCSMFEIDNYEEPSETIWGEVVDEATGKRVLT----DQGSEGIRVRLTELSWGDNV---------------QHNPDFYCMMDGTFQNTKI-RENTDGTLLHDGSVNTEISGTTKVKFEVQPFL............................................................................................................................................................................................................................................................................................................................................................................................................... 137
9 -3.740PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  25.......RLVERLKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRNDGSRMETGHAGRVE-LPTPAETDNHLTPYLYGTE....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 104
10 -3.740PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  1MNILNNKNKRT-------SIFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQLKKTGDFANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVK......................................................................................................................................................................................................................................................................................................................................................................................................................... 150

FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 9 7 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;