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Query: PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTETLTYLLEHPDKITSEETTQLRTVVEEFPFFQAARALHLKGLKNEDSFLYNTYLKKTAAHTQDRTVLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASASDKTEASSENTIIEETASETPLELETTIPSIEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQKNFSKAKQAYRILSLKYPEKSGFFADQIRAIEKLQENLast
1 -116.000PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali  100  1MNTETLTYLLEHPDKITSEETTQLRTVVEEFPFFQAARALHLKGLKNEDSFLYNTYLKKTAAHTQDRTVLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASASDKTEASSENTIIEETASETPLELETTIPSIEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQKNFSKAKQAYRILSLKYPEKSGFFADQIRAIEKLQEN 313
2 -5.700HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  31....................................................................................................................................................................................................................................................................QPDRMENILYDYHLSISMKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKK 98
3 -4.290PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  10  180......................................................................................................................................................................................................................................................................QRLTDVYGDV------YFDAGKGAGEFTPHYTRQDSIYMDLHDELRAAVDQ 227
4 -3.910PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  21  31..............................................................................................................................................................................................................................................................EKAKKEREQAVIARLIDI-------RKAQQEYRSL------HHGMYTEHFDTLIDFVKN 76
5 -3.890PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  18  61.......................RRKTRKVWPYAKLARRKYTKIVQKYIEEQFAAELKKLTR--TEGQILVKLIHRQT........................................................................................................................................................................................................................................... 132
6 -3.780PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  15  23............................................................................................................................................................................................................................................................TLKRMPQPVTALLAAMITPAVL--------ISGAGTLIMSTSTRVGRATDRVRGLTSRFKQ 75
7 -3.750HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  12  134........................................................................................................................................................................................................................................................................MEESKKEQWSAEVKCLRAY-FFLNLAFYYPPQTEVYSQVEKDLKTAIDL 201
8 -3.430PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  15  62.............................................................................................................................................................................................................................................................DNDTGNDGAGWLRPGLGEVYISTGSLYLCTTAF--LPLGLPASDDFWSQPDAPWTSAR.. 124
9 -3.050HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  17  2...................................................................................................................................................................................................................................................................SKKKRGEERMKEEDNILKKVGKK--------FKVPE--GYFENLTSEVMGKLPE 47
10 -2.940PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  8.............................................................................................................................................................................................................................................EELQNLGNAGKDNRQRVANIVLENKELFEPLLEVTFQVDEPISKAAWVLEWICTHHQLSIPHLTFFTENLKNLTFD 86

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 4 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.