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Query: PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSFSYSQVESKPQDSTEREYDYMIIEGDTIPREFIDLEEVIILNKIKFTSDLERRRYLILRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDILQRSFQRNILDNQPSVLNIDYFEASSKWLast
1 -86.500PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali  100  1MSFSYSQVESKPQDSTEREYDYMIIEGDTIPREFIDLEEVIILNKIKFTSDLERRRYLILRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDILQRSFQRNILDNQPSVLNIDYFEASSKW 209
2 -4.100PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  11  133...........................................................LDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKR-LDDAKTNLTAKLDEASKLLADSDGKV...................................................................................... 195
3 -3.910PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  18  24............................................................LRTVVEEFPFFQAA-------------------RALHLKGLKNEDSFLYNTYLKKTAAQDRTVLFDFITSEI............................................................................. 78
4 -3.650PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  52...ATPQTRVSDYDDTDGKHKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKTSNIPAYWQ-SQTVYGWYPNTADISLTGQD-NTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIP---GDKTYLATRKVGDYYTPDTKTSNNFVKIEV........................... 237
5 -3.160HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  32.......................LVTYGQGELVYFIVKPTNIS---VLSESSVGARIYALMTVLKGVAEIEMLCLNSRESFEDNKRFLKSEQEENPVIRRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLKEQIKRILAVYYEQNVTTEKFEDFDGERWIIPEI............................ 199
6 -2.460HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  28........................................................STEWNYDNEVAYGFGYGLSYTTFTQEIQGQPEISVNIDSETGAPQAY----TFNVKVTNTGKVPGKTSVQILEKVAIQLNFEKSSELAPGAS----EIVSVKVDLQYIASYDMEHDNGDGTTGTYV---LDPGTYY................. 164
7 -2.430PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  13  69.................................................................QLFMITDQGKKTLTYFISRIPE-EKRLKIDHLLNIKKEEFVRNTEIKGEYEKLTDNEYLVKLSVIEQGTPIFNLKLSVGNVKQA---KDMCEKWRSDAQELYG-------QIINLLI........................... 174
8 -2.380PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  10  16..................................................................AYRCGAFQLLAQMALRRELEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQP-----GLGEVYISTGSLYL--CTTAFLPLGLPASDD-SQPDAPWTSARV............................ 125
9 -2.380PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  147....................................................................................................................TVTNAETLISELEGKPRQVNRLAATRI---MRVLTFQRLTDVYGGEFTPHYTRQDSIYMDLHDELRAAVDQFDASQPTFGGADLFFNGSIEQW 249
10 -2.360PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  13  58.......................................................................................PTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIYRKERYITIQEQDYIRDSFV---RAGFSSDLIRYDAMVYMY............................ 148

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 6 1 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.