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Query: PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDTIDNFLDAMFAPYPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGAASLGLSVAILVSTGIPLFAFRGLSETGLVPFNEDTATFLALAVDLPLVALGVIMLLTRSRLFTNVKHLVDLEFTPDPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAALPLAVVQALPPIGVGMGVPAGADNGTLNGGDLSELALALSVVLVALGLWIFLPANWAVQTQQTLIRDGRQEYDYNEENYRDPVIGIVASVYWPCVIVAYFVWGAVFNQWDKSWVLFPISGLLFGVFALast
1 -124.000PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali  100  1MDTIDNFLDAMFAPYPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGAASLGLSVAILVSTGIPLFAFRGLSETGLVPFNEDTATFLALAVDLPLVALGVIMLLTRSRLFTNVKHLVDLEFTPDPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAALPLAVVQALPPIGVGMGVPAGADNGTLNGGDLSELALALSVVLVALGLWIFLPANWAVQTQQTLIRDGRQEYDYNEENYRDPVIGIVASVYWPCVIVAYFVWGAVFNQWDKSWVLFPISGLLFGVFA 354
2 -8.990PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  22.QKLLRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQ--------VITQKEVDAVIAIMGQPEDYQVDEDIFEDVPPGTGSAKSRTTRSAKK.............................................................................................................................................................................................................................................................. 112
3 -4.890PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  8KRTIQMYLEQRAAEDALFAKNYRNPAKNIDDCVTYILNYVQKSFTDGEIYGQAVHYYDE-NEIEVGKPIQCQVAVNHVVELTAEEKAEARQNAIRQYQDEEVRRLQNRNKPRTATKATVQEVQQPSLFDLG............................................................................................................................................................................................................................... 141
4 -4.750HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  1............................................................................................................................TFVWIIVPMARTATEKLEMRG---------QSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAG-------FIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAIC-----------KIRPLPTQARWILLALWLILCGVYIHQSGMLYDWHNYWAVW........... 208
5 -4.040HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  14  33VDKVKDELQKVIDLLESGETDTEVIQETLDEAVCGINDLQEEFDENDSEIETVARDGVTVAYILEWFGIPIDIEE....................................................................................................................................................................................................................................................................................... 109
6 -3.250PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  10.KSIAEYLLYMWQ-IDKFDYTDEQKEEEEDWFGDLVRMMNQEGCRENGHLQINKVVMQALTELHTQL-----ASSKFPFYSAEYYRVLPFIVELRGKTKQVADRMARKNEANLKEIAANLGHSEVETCFDVLYGVMMLR-LQKKEISRETETAVKEITTLIGML---------------SDYYQKDKTEGLQF................................................................................................................................................................. 199
7 -3.160PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  35.......................LYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDLDNAGNVLFKLNDADKDEEKSLRAAL-----------------TLHTIRETDLFEIFSSQ-VENKNVIDSLMGKYLDGNGNP............................................................................................................................................... 204
8 -2.990PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  5...................SFYKQRKPRSFDHKPIYYDQRRDELEKRI------------ERIRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSGRTLRTL-ALLIAVCLLSWLVFKVI..................................................................................................................................................................................................................... 113
9 -2.800PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  26  4.......................................................................................................................................................................................................................................................................................................................RSVPKSIWRTPPRKRRKWRFTV--WRRSWAA-PPSGNL..... 41
10 -2.790PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  135IDNLSMWCDYL-----------RMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHE-KERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQCVFG-----YKKADTLILSARIGDEIIETVEVDL--------------RTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMK............................................................................................................................................. 321

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Li Z, Li W, Godzik A. FFAS03: a server for profile--profile sequence alignments. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W284-8.