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Query: PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073], from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RADEFGYLFLDRPPYQVLASSAITYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFAIYEALAAWWEARGLLRRGHSQRDLFNHLASFAIHLARGIATRVTVPPLPGYHDSILEINSHGDTPASGAEHSGCARNLTPAQLDRFYQLLKFDCLCRDRSRNFPGWMPPSPLTEEERSNWMARITTPRSMEKYMPGLVKESPANLRRHGFIELFPCHPERPEEDNPTIVFFYYGLast
1 -98.300PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali  100  1RADEFGYLFLDRPPYQVLASSAITYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFAIYEALAAWWEARGLLRRGHSQRDLFNHLASFAIHLARGIATRVTVPPLPGYHDSILEINSHGDTPASGAEHSGCARNLTPAQLDRFYQLLKFDCLCRDRSRNFPGWMPPSPLTEEERSNWMARITTPRSMEKYMPGLVKESPANLRRHGFIELFPCHPERPEEDNPTIVFFYYG 239
2 -4.300PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  159...........QAPFNVWSQGKVAMPVGDNAAIPHMWVDAFFGSNFTHPNFKEKDRLVKGVCPIDFWKAMTE-FPEGRLVDLPLTVADLLAPDLN................................................................................................................................................ 252
3 -4.000HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  20  2............TPYKV-------SHQLKKLNNSSSLTKK--NMTMEENTVHPARK....................................................................................................................................................................................... 36
4 -3.000HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  22.........GKQVPENIIQPDRME---LYDYHLSISMGNN--DNYQKEAYKNYVFEKHHITEA---FDSSMVWYTRH----------EELASLYKKLGERFRSEKKHM................................................................................................................................... 110
5 -2.670HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  116..............YTQIAKYNTFLENITDCPMEESKKEQWSAEVKCLRAYFFLNLAFYYTDVPMPLKTLSV---DEANSISQTPQTEVYSQVEKDLKTAID......................................................................................................................................... 200
6 -2.620PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;  ali follow..  9.........IAGPSFEDLKQTNAHGAEYWSARELQPLLG-YSQWRRFEQAIERAITSCKESSPEHHFAGAGKPITGGKGAVQVVDDYHLSRFACYLIAQNGDPRKPEIAQAQKYFAIQTRR...................................................................................................................... 121
7 -2.430HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  10  4................ITNVPDKKNYAIDELGLSAQAARNLYAGKANAQVVNYLLESPRFLDLTYILEQYFNDTVAAGYAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTS............................................................................................................................ 102
8 -2.200PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  21  21..............YSSIMGP-INFEKIARLIDIRKAQQEYRSHGMYTEHFDTLID....................................................................................................................................................................................... 72
9 -2.190HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  11  63..YALMTVLKGVAEIEMLCNSRESFEDNKRLEQDQTHLDRIQVQMATAREFLIMLKDEKESDIFPYLSRIEKSLKEQSFSVKRADKEDIKRILAVYYEQ............................................................................................................................................ 179
10 -2.170PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  1.............P---VCGAKVSLE--------------ILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVE----APKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTSNQDRLALLKTLKVKDYKDVTASVLEDHLK................... 193

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 6 1 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.