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Query: PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKIQIKSEQITPFGGIFCVMEEFDALLSNIIDSTLGPRTKTFGYQYSEIFRSLMCVYFCGGSCVEDISTHLMSHLSFHPVLRSCSADTILRAIKELTVPNITYTSSVSGKSYDFNMADRMNELLRQGTHIYRRIKRGTLast
1 -88.300PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;  ali  100  1MAKIQIKSEQITPFGGIFCVMEEFDALLSNIIDSTLGPRTKTFGYQYSEIFRSLMCVYFCGGSCVEDISTHLMSHLSFHPVLRSCSADTILRAIKELTVPNITYTSSVSGKSYDFNMADRMNELLRQGTHIYRRIKRGT 139
2 -4.820HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  70...................LPGLFADSLPDTFGNQIINEWFASKGLSGEEITPLDRLCYVGKRGMGALEFEPSSPINGMNESSVLHIEELTELAKSVFTDRMAFQVQLRQE------GRNILDI----------LKVGT 173
3 -3.930HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  10  1MFSLLLSTFAMM---GLTFVIGFFVAGVIKLIASAADSLAFYSSHQEELA-------------RLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGVTKHPGDNRGFYHGVSPGESERGLM.............. 109
4 -3.670PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  15  12..................IVLKEYGKNIQKIVDWILTIEDREQRTRYANTCVELMRQLNPGVRDTEEHTTKLWDHLFIMSNFKLPYPMPDIAVLGRKPERVPYNHNKLKYKHYGKNINLLIEQAI.............. 122
5 -2.870PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  11  2........EKIISISGRPGLFEVHTQTRTGVVATSLVDGKRINANARNQV------------SLLSEINIYGLE-----------KEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVF.............. 95
6 -2.680HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  12  1MDMTDNNDDVLVKKFFSENRIDVPDDGFSRRVMRRLPDRTRSRLWTAVCVVIGLLIFFRNKG............................................................................. 64
7 -1.990HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  1......................VVVSILFQKARKVLNNERGEANY---STVVFIFIAVLLLAFIIDLFSIISTKQELDHAADQMVKQIQLSGGVNGETDELFEFLSSQIEGAENISYSIDATYTSPRPSGMTNAIQLGT 115
8 -1.950PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  14  12...........................................................................FSDMKSDSPDLKTAMLGRIRADEPRKVWTPSDFVDLASRDAVDKTLQRLTKAEALR--RIDRG. 72
9 -1.910HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  114...........NAYTQIAKYNTFLENITDCPMEESK----KEQWSAEVKCLRAYFFLNLATDVPMPLKTLSVDEANSI---SQTPQTEVYSQVEKDLKTA--------------------IDLLPVHYLRGIWRLPGGG 217
10 -1.610PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  237...................................................................................VDLPLTVADLLAPDLNQKLGNIDRAAG............................. 263

FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 9 7 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;