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Query: CE21227 CE21227 1315 PDB-2004-06-11, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSAQVNGISKRLIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQEKLRPFMEPIVPLPSIYYPDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLNATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSGQTKFKSAFVDFLVSSGMKPESIVSYNHLGNNDGKNLSEARQFRSKEISKSSVVDDMVKSNQILFPDAKNPDYCVVIKYVPYVADSKRAMDEYICSIFMGGKQTFVVHNTCEDSLLASPLIYDLAILTELASRVSYKVDDEYKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTKLVTALAGFPSDTDMQIEFFTQLPAAKSKSQLast
1 -6.390sp|Q15155|NOMO1_HUMAN Nodal modulator 1 OS=Homo sapiens GN=NOMO1 PE=1 SV=5 (Range: 745-810)  ali follow..  26  1..........................LQGPFSYDFSYWARSGEKITVTPSSKELLFYPPSMHGKAGLFLEG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 61
2 -5.570sp|Q5JPE7|NOMO2_HUMAN Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1 (Range: 746-810)  ali follow..  25  1...........................QGPFSYDFSYWARSGEKITVTPSSKELLFYPPSMHGKAGLFLEG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 60
3 -5.570sp|P69849|NOMO3_HUMAN Nodal modulator 3 OS=Homo sapiens GN=NOMO3 PE=2 SV=2 (Range: 746-810)  ali follow..  25  1...........................QGPFSYDFSYWARSGEKITVTPSSKELLFYPPSMHGKAGLFLEG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 60
4 -5.020sp|Q6UXT9|ABH15_HUMAN Abhydrolase domain-containing protein 15 OS=Homo sapiens GN=ABHD15 PE=2 SV=2 (Range: 96-180)  ali follow..  11  1................GPRSWFSGPHLQTLCELAREYLQLADDDWVVGPCVRGRRITSAGGLPAVLLVIPNAWGRLTRNVLGLCLL....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 85
5 -4.550sp|P37275|ZEB1_HUMAN Zinc finger E-box-binding homeobox 1 OS=Homo sapiens GN=ZEB1 PE=1 SV=2 (Range: 764-845)  ali follow..  6...........................................................................................................................................................................................................................................................NLSCAKKEPQKDSCVTDSEPVVNVIPPSANPINIAIPTVTAQLPTIVAIADQNSVP-----LRALAANKQTILIPQVA.................................................................................................................................................................................................... 79
6 -4.470sp|Q7Z404|TMC4_HUMAN Transmembrane channel-like protein 4 OS=Homo sapiens GN=TMC4 PE=2 SV=3 (Range: 271-348)  ali follow..  18  25..............................................................................................................................................VFSAWDFGLCGDVHVRLRQRIILYELKVELEETVVRRQ......................................................................................................................................................................................................................................................................................................................................................... 62
7 -4.430sp|Q8N7N1|F86B1_HUMAN Protein FAM86B1 OS=Homo sapiens GN=FAM86B1 PE=2 SV=2 (Range: 1-75)  ali follow..  14  1...................................................................................................................................................................................................................................................................................................................MAPEENAGTELLLQGFERRFLAVRTLRSFPWQSLE----------------KLRDSSDSELLRDILQKTVR---------HPVCVKHPPSVKYAW........................................................................................................................... 71
8 -4.390tr|E5RK26|E5RK26_HUMAN Uncharacterized protein OS=Homo sapiens GN=HSF4 PE=3 SV=1 (Range: 124-193)  ali follow..  11  1...................................................................................................................................................................................................................................................................................................................LRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQQHRVIGKLIQ....................................................................................................................................................... 67
9 -4.390sp|Q9ULV5|HSF4_HUMAN Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=2 (Range: 124-193)  ali follow..  11  1...................................................................................................................................................................................................................................................................................................................LRGDDGRWRPEDLGRLLGEVQALRGVQESTEARLRELRQQNEILWREVVTLRQSHGQQHRVIGKLIQ....................................................................................................................................................... 67
10 -4.090sp|P01266|THYG_HUMAN Thyroglobulin OS=Homo sapiens GN=TG PE=1 SV=5 (Range: 407-507)  ali follow..  18  4......................................................................................................................................................................................................................................................................................................PTIKELFVDSGLEGQSQQFSVSENLLKEAIRAIFPSRGLARLALLQQNLFGGKFLVNVGQ........................................................................................................................................................................... 76

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 1 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.