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Query: TM0001 TM0001 281882 Purified-2001-08-24, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40
1 -4.420sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo sapiens GN=C20orf152 PE=2 SV=2 (Range: 1-78)  ali follow..  25  20.......YQLAMDIIIMIRVCKMFRQGLRGFREY....... 46
2 -4.080sp|Q5U3C3|TM164_HUMAN Transmembrane protein 164 OS=Homo sapiens GN=TMEM164 PE=1 SV=1 (Range: 231-297)  ali follow..  23  2............EVNLNNMLCPAISDPFYGPWYRIWAS... 27
3 -4.080tr|Q9H617|Q9H617_HUMAN Putative uncharacterized protein RP13-360B22.2 OS=Homo sapiens GN=RP13-360B22.2 PE=2 SV=1 (Range: 192-258)  ali follow..  23  2............EVNLNNMLCPAISDPFYGPWYRIWAS... 27
4 -3.820sp|Q9BRK0|REEP2_HUMAN Receptor expression-enhancing protein 2 OS=Homo sapiens GN=REEP2 PE=2 SV=2 (Range: 96-149)  ali follow..  29  24MRVGKRGLNLAANAAVTAAAKGVLSEKLRSF.......... 54
5 -3.430sp|Q13586|STIM1_HUMAN Stromal interaction molecule 1 OS=Homo sapiens GN=STIM1 PE=1 SV=3 (Range: 433-488)  ali follow..  19  2.................EILCGFQIVNNPGIHSLVAAL... 22
6 -3.350tr|A8MPW8|A8MPW8_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1 (Range: 171-221)  ali follow..  32  10..YGSKKVGLTRCLLTKE--------EMRTFHFPLQGF... 37
7 -3.350sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1 (Range: 171-221)  ali follow..  32  10..YGSKKVGLTRCLLTKE--------EMRTFHFPLQGF... 37
8 -3.300sp|P12107|COBA1_HUMAN Collagen alpha-1(XI) chain OS=Homo sapiens GN=COL11A1 PE=1 SV=4 (Range: 264-315)  ali follow..  20  10..YGEAEYKEAESVVTEETIAQTEANIVDDFQEYNYG.... 49
9 -2.890sp|Q9NVU7|SDA1_HUMAN Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=3 (Range: 114-223)  ali follow..  17  74.LYRRNIWNDAKNVITTACFSKVTKILVAALTFFL...... 109
10 -2.870sp|Q63HM2|CN135_HUMAN Pecanex-like protein C14orf135 OS=Homo sapiens GN=C14orf135 PE=2 SV=4 (Range: 465-533)  ali follow..  18  24.......WQNTENALLETVIVSTVHLISSTDIWWNRSLDT. 56

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 1 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.