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Query: TM0005 TM0005 281886 Purified-2001-01-30, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVQQFIKKLVRLVELERNAEINAMLDEMKRLSGEEREKKGRAVLGLTGKFIGEELGYFLVRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRIDLFASDITFRRQIENLMTLSSEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIKKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQVVLSTNSSAALEILSGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKDLSRTLFEELITRYPEKSSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIFLast
1 -6.510sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)  ali follow..  12  33...............................................................................................................................................................................KDLIHCWAESPKIINLYHHPGCGGT-TLAMHVLWDLKKNFRCAVLKNKTTDFAEIAEQV---INLVTYRAKSHQDYIPVLLLVDDFEEQENVYFLQNAIHSVLAEKDLRYEKTLVIILNCMRSRNPDESAKLADSIALNYQLSS........................................................................................................................................................................................................................................................................................................................................... 177
2 -6.060sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)  ali follow..  6  72........................................................................................................................................................................KESDRTFEILEKFALKDVELDFNNVAADSSLDSVPRFFRINPTPTYKS.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 119
3 -5.600sp|Q8N0U4|F185A_HUMAN Protein FAM185A OS=Homo sapiens GN=FAM185A PE=2 SV=3 (Range: 68-151)  ali follow..  12  4.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VSPFGR----LRARLPCHLAVRPLDPLTYPDGDRVLVAVCGVEGGV-----RGLDGLQVKYDEDLEEMAIVSDT......................... 68
4 -4.980tr|E9PGS4|E9PGS4_HUMAN Uncharacterized protein OS=Homo sapiens GN=PNPLA5 PE=4 SV=1 (Range: 76-172)  ali follow..  17  3...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LERLSLSILHPAYAPIEHVKQQLQDALPPDAHVLASQR----LGISLTR---------WPDGRNFLVTDFATCDELI.............................. 66
5 -4.370sp|Q9UBN4|TRPC4_HUMAN Short transient receptor potential channel 4 OS=Homo sapiens GN=TRPC4 PE=1 SV=1 (Range: 239-327)  ali follow..  14  1............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SEYEELSRQC-KQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLKLAIKYRQKEFVAQPNCQQLLASRWYDEFPGWRRRH...... 87
6 -4.320sp|Q2TAZ0|ATG2A_HUMAN Autophagy-related protein 2 homolog A OS=Homo sapiens GN=ATG2A PE=1 SV=3 (Range: 442-539)  ali follow..  9  1........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SAPSSGPPDLATHFFTEFDATKDGPFGSRDFHHLRPRFQRACPCSHVRLTGTAVQLSWELRTGSRGRRTTSMEVHFGQLEVLECLWPRGTSEPEYTEI 98
7 -4.250sp|Q9HCX4|TRPC7_HUMAN Short transient receptor potential channel 7 OS=Homo sapiens GN=TRPC7 PE=1 SV=1 (Range: 261-351)  ali follow..  10  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DYRKLSMQC-KDFVVGVLDLCRDTEEVEAILNGDVNFQVWSDHHRPSLSRIKLAIKYEVKKFVAHPNCQQQLLTMWYENLSGLRQQS...... 87
8 -4.220sp|Q9NVF7|FBX28_HUMAN F-box only protein 28 OS=Homo sapiens GN=FBXO28 PE=1 SV=1 (Range: 137-221)  ali follow..  17  6......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIVLRYVNSTRA---------------PQRAHEVLQELRDISSMAMEYFDEKIVPILKR....... 85
9 -4.050tr|E7ERX2|E7ERX2_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZSWIM4 PE=4 SV=1 (Range: 131-213)  ali follow..  16  10.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NDAYLQRILASDSYGPSLTGSVGGDKEPFPTACARVDTLRAHGYPRQALRLASAIINTLR................................. 82
10 -4.040sp|Q9Y210|TRPC6_HUMAN Short transient receptor potential channel 6 OS=Homo sapiens GN=TRPC6 PE=1 SV=1 (Range: 316-404)  ali follow..  11  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DYKKLSMQC-KDFVVGLLDLCRNTEEVEAILNGDVETLQSGDHGRPNLSRLKLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQT...... 87
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.