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Query: TM0007 TM0007 281888 Purified-2004-07-19, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEFLIYSLPEEVLREEMLGNFSVALKLIDDFLKKDLPLLQRERLIYEKERIERLLEDYPFTEKEAMEKMREMFEGFSEGEFQYLMNEGVLDYIVVEGEKRFERRFFHNLAFVRSEYRERLRKDERSEKARRILHERLERLIKGEDPKRYRIRARITLKLKETSSKHRVWLPFPKESLQIESVKLLRTSHKSYYISPNDVPQRTIYFEGEDSTFFVEFEYIVREWVNHVDPERVSEKVAGFEEFLKEEPPHIVFTPKLRWLTQTVVGSEVNPYLKAKRIYDWITLNVRYSYVKPYALYENITDFVVNNLKGDCGFQALLFITMCRIAGVPARWQSGWYINPIFGSPHDWALFYVEPYGWLPADLSFGGARRDNESFRSFYFGNLDGFRMVANDGFMKDFDPKTRFVRSDPTDNQVGEAESEEKRLPFESTIEVISFEEVLast
1 -4.660sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=ODZ2 PE=1 SV=3 (Range: 2403-2499)  ali follow..  15  5.......................................................................................................................................................................................................................................................................................................................................MVIGFH-GGLYDPLTKLVHFTQRDYDVLAGWTSPDYTMWKNVGKEPAPFNLY........................................................... 56
2 -4.590sp|Q96I76|GPTC3_HUMAN G patch domain-containing protein 3 OS=Homo sapiens GN=GPATCH3 PE=2 SV=1 (Range: 177-247)  ali follow..  19  16....................................................................................................................................................................................................................................................................................................................RGNVGTPLRVFLELIRACRLPPRIITQLQLQFPKTGSS-------RRYGNVPFE............................................................................ 62
3 -4.320sp|Q6ZUG5|YC006_HUMAN Uncharacterized protein FLJ43738 OS=Homo sapiens PE=2 SV=1 (Range: 164-240)  ali follow..  12  2......PMP--------RGNYLEADSQLKLRVDIAVPLRAGARADLGGSQFGRIIFVFDFKKVSLLHSLLQDITMINAKALG.................................................................................................................................................................................................................................................................................................................................................................... 72
4 -4.270sp|Q96JN8|NEUL4_HUMAN Neuralized-like protein 4 OS=Homo sapiens GN=NEURL4 PE=1 SV=2 (Range: 1316-1440)  ali follow..  14  14...............................................................................................................................................................................................................................................................................................................PAASPLKSC-EYHALCSRFQELLLLPEDYFMPPPKRSLCYCESC-PREYALPFGWCRFNLRVNPRLEAGTLTKKWYHGNVAAVRRVLDRGELGA......................................... 124
5 -4.250sp|Q8IY22|CMIP_HUMAN C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=1 SV=3 (Range: 429-542)  ali follow..  4..........................................................................................................................................................................................................................................................LMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRP----SLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPG................................................................................... 104
6 -4.220sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5 (Range: 553-630)  ali follow..  14  8..............................................................................................................................................................................................................................................................SGLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCCSRCHHGLFNTHWRCPRCS----LCVACGRVAG............................................................................................................... 78
7 -4.170sp|Q9NVE5|UBP40_HUMAN Ubiquitin carboxyl-terminal hydrolase 40 OS=Homo sapiens GN=USP40 PE=2 SV=3 (Range: 983-1131)  ali follow..  17  69.................................................................................................................................................................................................................................................................IEICLEPLQKGENLGPQDVLLRVRIPGERTYAPAL---------DLVWNAAQGG--TAGSLRQRVADFYRLPVEKIE--------------AKYFPEKFEWLP.............................................................................. 149
8 -4.160sp|Q8IWA6|CCD60_HUMAN Coiled-coil domain-containing protein 60 OS=Homo sapiens GN=CCDC60 PE=2 SV=2 (Range: 453-550)  ali follow..  16  6...LLSKLPEDLKN----------FRPAKKILVKLQKFGENLDLRIRPHVLLKVLQDLRIDIAVAIEFVREHIIHMPQEDYISWLQSR.............................................................................................................................................................................................................................................................................................................................................................. 86
9 -4.110sp|Q8NG08|HELB_HUMAN DNA helicase B OS=Homo sapiens GN=HELB PE=1 SV=2 (Range: 42-165)  ali follow..  2.........................................................................................................................................................................................................................................................................................................................DAEELCSGGVKAGSLPGCLRVSICDENTQETCKVFGRFPITGAWW---RVKVQVKPVVGSRSYQYQVQGFPSYFLQSDMS............................................. 78
10 -4.100sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=2 (Range: 4293-4391)  ali follow..  18  6...........................................................................................................................................................................................................................................................TTGTQVQNITVTQYDPEEDCRKMAKEYGDYFVVEYRDQKPYCISPCEPGFSVSKNCNLGKCQMSLS---PQCLCVTTETHWYSGETCN................................................................................................... 91

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 8 3 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.