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Query: TM0008 TM0008 281889 Crystal|NMR-2001-04-01, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIELSYPIEERMLTYPDNPPDYFEPKSRIEQGDAANTMMIHHFSHTGTHVDAPYHFCEEGWTLDQIPLEYFIFEKPLLVDREKKPMELFTIEDIEELDLNGVDLLMFRSGFAKLRRTDPATYRYMFPGISKELARFLRESVLSLKAVMLDFLSADPIVLGEKENYPAHRWLLSKKFSSKRPIIIFEDVNLEPVAGKKIKRVIALPLRFKGLDGGPVSVLAEVELast
1 -6.480tr|B5MCL5|B5MCL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=SMARCB1 PE=4 SV=1 (Range: 1-132)  ali follow..  13  21....................................................................................................DDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLAT--VEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKAS--------VEEILDGNDEKYKAVSISTEPPTYLSFDDHDPAVI..... 130
2 -5.080tr|Q6NXF4|Q6NXF4_HUMAN Sterol carrier protein 2 OS=Homo sapiens GN=SCP2 PE=2 SV=1 (Range: 97-197)  ali follow..  14  45....................................................................................................................................................................GWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPT----SDGAAAAILASEA 100
3 -4.830sp|Q9UH90|FBX40_HUMAN F-box only protein 40 OS=Homo sapiens GN=FBXO40 PE=1 SV=2 (Range: 382-551)  ali follow..  13  1...DLGITVED----LPKSDLIKTTLQCALERELKGHVISESRSID-GLFMDF-------ATQTYNFEPEQFSSGTVLADLTAATPGGLLHSECVTRRHNKSSSAFTFTCNKFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCP-LAYLGCTFVQNHFRPPGQKAKVIYSQEL.................................................... 159
4 -4.710sp|Q9Y238|DLEC1_HUMAN Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens GN=DLEC1 PE=2 SV=2 (Range: 590-649)  ali follow..  18  4..LDLIYISGEKSQPDPGETDLTAQHFIRFEPENLRSTARKQLIIRNATHVELAFYW....................................................................................................................................................................... 59
5 -4.210sp|Q6Q759|SPG17_HUMAN Sperm-associated antigen 17 OS=Homo sapiens GN=SPAG17 PE=1 SV=1 (Range: 997-1079)  ali follow..  15  31...IPTQISGSNYYLYPSDGGQIEVEKTMFEKGPTFIKVRVVKDNHN-IHLNDP.......................................................................................................................................................................... 82
6 -4.200sp|P22307|NLTP_HUMAN Non-specific lipid-transfer protein OS=Homo sapiens GN=SCP2 PE=1 SV=2 (Range: 176-241)  ali follow..  14  10....................................................................................................................................................................GWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPT----SDGAAAAILASEA 65
7 -4.150sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=2 SV=3 (Range: 1-111)  ali follow..  49.......................KSKTEDMVEKRTFSMTERLPPIQSMVHAGS-FHILVVY--CGDLILRLFGDHFRA.................................................................................................................................................. 100
8 -4.120sp|Q8WUJ3|K1199_HUMAN Protein KIAA1199 OS=Homo sapiens GN=KIAA1199 PE=1 SV=2 (Range: 404-588)  ali follow..  18...STILNLEDNVQSWPGDTLVIASTDYSMYQAEEFQVLPCRSCAPNQVKVAGKPMYLHIGEEIDGVDMRAEVG...................................................................................................................................................... 89
9 -4.100sp|Q8WYQ5|DGCR8_HUMAN Microprocessor complex subunit DGCR8 OS=Homo sapiens GN=DGCR8 PE=1 SV=1 (Range: 60-169)  ali follow..  17  3................PAEDPFNFYGASLLSKGSFSKGRLLIHSPRTARHAPAVRKFSPDLKLLKDVKISVSFTES-----------------------CRSKDRKVLYTGAERDVRAE......................................................................................................... 88
10 -4.080sp|P35573|GDE_HUMAN Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3 (Range: 1-183)  ali follow..  12  4....................................SKQIRILLLNEMEKLEKTLFRLEQGYELQFRLGPTLQGKAVTVYTNYPFPGETFNREKFRSLDWENPKLNLQQSGSFQYYFLQGNEKSGGG-YIVVDPILRVGADNHVLPLDCVTLQTFLAKCLGPFDEWESR---------------------LRVAKESGYNMIHFTPLQTLGLSRSCYSLANQLE 180

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 8 2 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.