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Query: TM0012 TM0012 281893 Purified-2001-08-29, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .
# Score Template Links and tools%idFirst MKKFPINSDQEVAVLVKSKEELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKREGLast
1 -6.840sp|Q49AR2|CE022_HUMAN UPF0489 protein C5orf22 OS=Homo sapiens GN=C5orf22 PE=1 SV=2 (Range: 258-442)  ali follow..  16  115..................TEQEIECLIQSVHYLLKNLPNPTLVTIARSSLD--DYCPSDQVDTIQEKVLNMLRALYGNLDLQVYAAESPPS..................................................................................... 185
2 -5.880tr|B6ZDN3|B6ZDN3_HUMAN Uncharacterized protein OS=Homo sapiens GN=DCDC5 PE=4 SV=2 (Range: 1-132)  ali follow..  12  18....................................................................EITSANYAGVCTS-GYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQGPFKVIS------VAEVDLSCDKAEKTLSYYQARLLSLRMKT 129
3 -5.820sp|Q6ZRR9|DCDC5_HUMAN Doublecortin domain-containing protein 5 OS=Homo sapiens GN=DCDC5 PE=2 SV=2 (Range: 349-476)  ali follow..  12  14....................................................................EITSANYAGVCTS-GYCYLSPDGKRKTMLCLACGQSMRTEKGLKQLLPGVPFLCISGTKTQKPFLQGPFKVIS------VAEVDLSCDKAEKTLSYYQARLLSLRMKT 125
4 -5.440sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 (Range: 708-906)  ali follow..  12  43......................................QKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKNKFSNYYRAEMIDALANSVTPAVSVNNEVRTLDNLILEEITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDPALFKSYAEYGHFVDI........ 179
5 -5.180sp|Q6ZN30|BNC2_HUMAN Zinc finger protein basonuclin-2 OS=Homo sapiens GN=BNC2 PE=2 SV=1 (Range: 72-261)  ali follow..  14  56..........................................................................................GKINLRTC--DQCWVAHALDKLSTQHLYHPTQVEIVQSNVVFDISSLMLYGTQAVPVRLKILLDRLFSVLKQEEVLHILHGL.... 138
6 -4.910sp|Q9NZQ8|TRPM5_HUMAN Transient receptor potential cation channel subfamily M member 5 OS=Homo sapiens GN=TRPM5 PE=1 SV=1 (Range: 22-150)  ali follow..  16  28........................................................PSVLFDLLLAEWHLPAPNVVSLVGEEQPFAMKSWLRDVLRKGLVKAAQSTGAWILTSALRVGLARHVGQAVRDHSLASTSTK-VVAVGMASLGRVLHRRI.................... 129
7 -4.840sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3 (Range: 2441-2829)  ali follow..  286................................................................FYQINTTSVLCDIHCEANQEYEHPRDLAACCGSCRNVSCLFTFPNGTTSLF------LPGASWIA---DCARHHCSSSC---PPLNETE....................... 374
8 -4.610tr|B1AHL9|B1AHL9_HUMAN Patatin-like phospholipase domain containing 5 (Fragment) OS=Homo sapiens GN=PNPLA5 PE=4 SV=1 (Range: 73-268)  ali follow..  13  2.............................MVGQLERLSLSILHPAYAPIEHVKQALPPDAHVLASQRLGISLTRWPDGRNFLTDFATCDE----LIQVVADNCRQGYLDALRFLERRGLTKEPVLWTLVSKEPPAPAD--GNWDAGC-VQVKDVPNFEQLSPELEAALKKACTRD. 161
9 -4.590sp|Q9BTW9|TBCD_HUMAN Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=2 (Range: 21-230)  ali follow..  11  10...............FGESAETRALLGRLREVHGGGAEREVFRVIMDKYQEQPHLLDPHLEWMMNL-----------LLDIVQDQTSPASLVHLAFKFLYIITKVRGYKTFVEPVLDLVTIQNPKDHEAWETRYMLLLWLSVTCLIPFDFSRLDGNLLTQPGQARMSIMDRI.... 169
10 -4.480sp|Q86Y33|CD20B_HUMAN Cell division cycle protein 20 homolog B OS=Homo sapiens GN=CDC20B PE=2 SV=3 (Range: 139-233)  ali follow..  19  44..............................................................................................MQLCEQSECVWKGCK---------------DGVRDESFHLKSSGDINDSILQPEVKIHRNDYY................... 95

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 1 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.