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Query: TM0016 TM0016 281897 Purified-2001-08-24, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRMSLKSWKEIPIGGVIDKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQAIIQEGGIMKGFNYDYCKGCGLCANVCPKQAIEMRPETEFLSEEGLast
1 -8.810sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 OS=Homo sapiens GN=SLC44A5 PE=2 SV=2 (Range: 99-240)  ali follow..  12  2....................................................CTSPSVLLNLQ---------CPTTQICVSKCPEKFLTYVEMQLLYTKDK 41
2 -8.630sp|Q53GD3|CTL4_HUMAN Choline transporter-like protein 4 OS=Homo sapiens GN=SLC44A4 PE=2 SV=2 (Range: 103-227)  ali follow..  17  2....................................AENGLQCPTPQVCVSSCPEDPWTVGKNEFSQ-EVFYTKNRNFCLELCPSFLLPSAP......... 74
3 -8.350tr|E9PBA0|E9PBA0_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC44A4 PE=4 SV=1 (Range: 105-234)  ali follow..  19  5.........................................QCPTPQVCVSSCPEDPWTVGKNEFSQ-EVFYTKNRNFCLELCPSFLLPSAP......... 72
4 -8.100tr|E9PCE9|E9PCE9_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC44A4 PE=4 SV=1 (Range: 105-234)  ali follow..  19  5.........................................QCPTPQVCVSSCPEDPWTVGKNEFSQ-EVFYTKNRNFCLELCPSFLLPSAP......... 72
5 -7.910sp|Q8IWA5|CTL2_HUMAN Choline transporter-like protein 2 OS=Homo sapiens GN=SLC44A2 PE=1 SV=3 (Range: 95-204)  ali follow..  17  1....................................................CASPLVLLEFQ---------CPTPQICVEKCPDRYLTYLNARSSRDFE. 39
6 -7.440sp|Q8WWI5|CTL1_HUMAN Choline transporter-like protein 1 OS=Homo sapiens GN=SLC44A1 PE=1 SV=1 (Range: 52-213)  ali follow..  17  1...........................TGAAARLVSGYDSY---------NICGQKNTKLEAIPNSGMDHTQIKSVALCVAACPRQELKTLSDVQKFAEI. 83
7 -6.930sp|Q8N4M1|CTL3_HUMAN Choline transporter-like protein 3 OS=Homo sapiens GN=SLC44A3 PE=2 SV=4 (Range: 56-213)  ali follow..  20  16...................................................MCGKKNSPVEGAPLSGQDMTLLNRMALCVSNCPEEQLDSLEEVQFFANT. 82
8 -6.540sp|Q86VP1|TAXB1_HUMAN Tax1-binding protein 1 OS=Homo sapiens GN=TAX1BP1 PE=1 SV=2 (Range: 717-789)  ali follow..  15  7......................................SFDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCS........................ 45
9 -6.150sp|Q9UGI8|TES_HUMAN Testin OS=Homo sapiens GN=TES PE=1 SV=1 (Range: 22-91)  ali follow..  18  1.............................................CLKCKEKCEGFELHFWRK--------ICRNC-----KCGQEEHDVLLSNEEDRKVG 43
10 -6.080tr|E9PHF9|E9PHF9_HUMAN Uncharacterized protein OS=Homo sapiens GN=POLE PE=4 SV=1 (Range: 1-134)  ali follow..  28  67....................................VLPEVICRSCNFCLDLCKDSSFSEDGAVLPQWL------CSNCQAPYDSSAIEM........... 116

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 8 3 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.