current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: TM0017 TM0017 281898 Purified-2003-03-05, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390
# Score Template Links and tools%idFirst MRMERVVERVAVTGAEAVANAMRQIEPDVVAAYPITPQTPIVEYFARFVADGVVRTEMIPVESEHSAMSAVVGAAAAGARAMTATSANGLALMHEIVYIAASYRLPIVMPVVNRALSGPINIHCDHSDAMAERDSGWIQLFAETNQEAYDFTILAVRLAEHEDVRLPVMVNLDGFILSHGVEPVEFYPDELVKKFVGELKPMYPLLDTEHPVTWGPLDLYDYYFEHKRQQIEAMENVKKVFPEIAKEFEETFGRKYWFVEPYRMEDAEHVMVALGSTNSTIKYVVDELREEGYKVGSLKIWMFRPFPKEQLQELLNGRKSVVVLDRAVSFGAEAPLYEAVKSALYEVAARPMLGSYVYGLGGRDIKPEHIRKAFEDAINGNLIADEQRYLGLRELast
1 -6.380sp|Q68CZ2|TENS3_HUMAN Tensin-3 OS=Homo sapiens GN=TNS3 PE=1 SV=2 (Range: 774-862)  ali follow..  27  61..........ILSSKESMCST---------PAFPVSPETPYVKTALRH.......................................................................................................................................................................................................................................................................................................................................................... 89
2 -5.020sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1 (Range: 3659-3858)  ali follow..  14  83...............YALSILVQPSDGEVGNELPVQPQLVFLDEQNRRVESPPSEPWTISASLEGASDSVLKG-------CTQAETQDGYVSFYNLAVLISGSNWHFIFTVTSTARSKPFAVLPVTRKEKST...................................................................................................................................................................................................................................................................... 200
3 -4.990tr|F8W1D1|F8W1D1_HUMAN Uncharacterized protein OS=Homo sapiens GN=PMEL PE=4 SV=1 (Range: 25-184)  ali follow..  13  39............GSQVWGGQPVYPQETDDACIFPDGGPCP--------SGSWSQKRSFVYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRVPLAHSSSAFTITDPFSVSVSQLRALDGGNKHFL................................................................................................................................................................................................................................................................ 160
4 -4.850sp|Q9P2N6|K1310_HUMAN Uncharacterized protein KIAA1310 OS=Homo sapiens GN=KIAA1310 PE=1 SV=2 (Range: 783-873)  ali follow..  21  7.........................................MQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTGGLAKLASSLPGLAQISNQ---ASGLKVPTTITLTLRGQPSRIT................................................................................................................................................................................................................................................................................. 91
5 -4.820sp|Q9BX26|SYCP2_HUMAN Synaptonemal complex protein 2 OS=Homo sapiens GN=SYCP2 PE=2 SV=2 (Range: 1341-1440)  ali follow..  12  17..........................................................................................................................................................................................................................................EMTYETYERLNSEFKRRNNIRHKMLSYFTTQSWK-----------TAQQHLRTMNHQSQDSRIKKLDKFQFIIIEELENFEKDSQSLKDLEKE................................................................... 98
6 -4.730sp|Q86WI1|PKHL1_HUMAN Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2 (Range: 3997-4187)  ali follow..  85...............SSLLVITQPVAAQPGQPFPQQPSVKATDSDGNCVSVGITA---LTLRAILKDSNNNQVNGLSG--NTTIPFSSCWANYTDLTPLRTGKNYKIEFILDNGVESRTFSL................................................................................................................................................................................................................................................................................ 188
7 -4.670sp|Q7RTU3|OLIG3_HUMAN Oligodendrocyte transcription factor 3 OS=Homo sapiens GN=OLIG3 PE=1 SV=2 (Range: 147-272)  ali follow..  4.........EIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHPILGGALSSGNASS------PLSAASLPAIGTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPCPCTIHLSALSTANMARLSAESKDLL........................................................................................................................................................................................................................................................................ 125
8 -4.610sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4 (Range: 3242-3331)  ali follow..  15  1...........................KIRQIYQASPQTTTEQAILEGQYAALEGSQFWATEDATTTASAVVAIEIPQSQGWYTVQSDGVT............................................................................................................................................................................................................................................................................................................... 72
9 -4.350sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1 (Range: 85-180)  ali follow..  18  1.................................PATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQLPACS--VMFSGQHYPLCCLPPPLIQACTMQQLPVPYQISSDH............................................................................................................................................................................................................................................................................ 96
10 -4.300sp|Q5THK1|PR14L_HUMAN Protein PRR14L OS=Homo sapiens GN=PRR14L PE=1 SV=1 (Range: 1803-1897)  ali follow..  12  2..............................................................GGTAIVQTRADCSVLGLHTLLALCSPGCLFMTQFTQGLKGLRSPAVFCSLPYSVGRVLSIWSQHGPSVCS...................................................................................................................................................................................................................................................................... 95

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 8 3 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.