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Query: TM0018 TM0018 281899 Purified-2001-08-24, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPVNIKQLAQEFDKKEIGITQGHRLCPGCGAPITVKFVMMIARHLGYEPVVGLATGCLEVSTSIYPYTAWSVPYIHNAFENVAATMSGVETAYKALKNKGKIPEDKKYAFIAFGGDGGTYDIGLQSLSGMLERGHKVLYVLYDNEGYMNTGNQRSGSTPPGSDTTTAPVGKKLPGKVQLKKNIVEIVAAHENVYAATASLSEPMDFFAKVEKALNFDGPSFLAVFSPCVRFWRVNDDKTVEISKLAVETKYWPLYEVERGVYRVTRKPRQFKPVEEFLKAQGRFRKLLSRPDAKEIVDELQEYVDRRWERLLTLEEVTKDKPIRLast
1 -5.480sp|Q96JH7|VCIP1_HUMAN Deubiquitinating protein VCIP135 OS=Homo sapiens GN=VCPIP1 PE=1 SV=2 (Range: 42-180)  ali follow..  14  29.........................CTECGQRHEQQQLLGVEEVTDPDVVLHNLLRNALLGVTGAPKKNTELVKVMGLSNYHCKLLSPILARYGMDKQTGRAKLLRDM------NQGELFDCALLGDRAFLIEPEHVNTVGY...................................................................................................................................................................................... 139
2 -5.110sp|Q92622|RUBIC_HUMAN Run domain Beclin-1 interacting and cystein-rich containing protein OS=Homo sapiens GN=KIAA0226 PE=1 SV=4 (Range: 675-736)  ali follow..  17  35.............TRKIAVAKQNYRCAGCGIRTDPDYIKRL........................................................................................................................................................................................................................................................................................... 62
3 -4.930sp|P60852|ZP1_HUMAN Zona pellucida sperm-binding protein 1 OS=Homo sapiens GN=ZP1 PE=2 SV=1 (Range: 30-159)  ali follow..  13  5................................................................................................................LPGLRHSYDCGIKGMQLLVRPGQTLRFKVVDEFGNRF---DVNNCSICYHWVTSRPQEPAV------------FSADYRGCHVLEKDGRF---HLRVFMEAVLPNGRVDVAATLICPK.............................................................................................. 108
4 -4.800sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1 (Range: 1797-1893)  ali follow..  14  7...............................................................................................................................................SKNAFPLGAPTLVTSQATTLSTFQPANKLNKNVPTNVRS-VSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGG-----TFSPSPNTWG........................................................................................... 93
5 -4.560sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1 (Range: 1659-1837)  ali follow..  14  9......................................................................................................................AYRVGMLALEMLGRRAHN------------DHPNNFSRSPPYTDDVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIVMETLQRLSPAHAHNHLRAPAFHQLVQRCQQAY--------------MQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGQFNDILQNLKRSKQTKELWQRVSLEMATFSP........... 179
6 -4.550tr|C9JU11|C9JU11_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD3 PE=4 SV=1 (Range: 1-171)  ali follow..  12  41...................................EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKEMEKYADREDM-----IIMFVDS--YDVILAGLKKFVQSGSRLLFFCWPEWGFLNSG............................................................................................................................................................................. 171
7 -4.300sp|Q09328|MGT5A_HUMAN Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT5 PE=1 SV=1 (Range: 449-741)  ali follow..  13  1...................................................................................SLVYGKVDSFWKNKKIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFSSKNTDFFIGKPTLRELTSQHGRPHVWTVDLNNQEEVEDAVKAILNQKIEPYM...................................................................................................... 155
8 -4.300sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3 (Range: 4472-4553)  ali follow..  13  10.................................................................................................................SGADLNMDIGVSGIDRSMAMSEDFVMIIFENPMYSARDSAVKVVQPIQVTVSENVDNKN........................................................................................................................................................ 80
9 -4.260sp|Q9HCU5|PREB_HUMAN Prolactin regulatory element-binding protein OS=Homo sapiens GN=PREB PE=1 SV=2 (Range: 1-91)  ali follow..  12  19.....................................................................................................LQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSASLLHSHDTETRATMNLALAGDILAAGQDAH........................................................................................................................................................ 89
10 -4.260tr|B5MC98|B5MC98_HUMAN Uncharacterized protein OS=Homo sapiens GN=PREB PE=4 SV=1 (Range: 1-91)  ali follow..  12  19.....................................................................................................LQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSASLLHSHDTETRATMNLALAGDILAAGQDAH........................................................................................................................................................ 89
FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 8 3 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.