current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: TM0013 TM0013 281894 Purified-2001-08-24, from JCSG0516

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSLLast
1 -24.600PF14597.4; K9Q9I8_9NOSO/1-199; Metallo-beta-lactamase superfamily  ali follow..  12  15.....................FNPARNIDFNGIAWIRPDGNILIDPVALS------HDWNHLESLGGVDWIILTNS--EHIRAAKEIAVQT-YAKVAGPAAEKECFP-------IACDRWLSDGDEFV-----GLTTIELQGSKTPGELALL--EETTLITGDLV---------------RAHKAGTLTILAKEKLLDPQAAIASVHRLAQLNVETVLVGDGWSVFRDGHLRLKELAATL............. 199
2 -18.700PF00753.25; PDLA_RHILO/30-244; Metallo-beta-lactamase superfamily  ali follow..  15  4...........................FPVYSILIEHAEGRFLIDTG-QEKHQTIPGALGLLLEPRDIDVVVNSHFHFDHCGGNKYF----PHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATGVKLISTP--HSIGHYSLLVEFPRILFTIDAA........................................................................................ 180
3 -13.600PF12706.5; I3ZD26_TERRK/61-263; Beta-lactamase superfamily domain  ali follow..  13  1.......................................RNLLVDPVFERLVLLRRQRPGILIHLPPVDAVLLTHAHMDHLNLPSLRKRHATKLTVIVPKGVADLVENLGFRSVTEL-----EWWQTTALADEPVSITMTPARHWGAGYVIAGAGHSVYHSGDTAYFGHEIGQRLQPQIAL---LPIGAYFPDSYRAVHTSPEEALQAFLDLGATTMVPMH................................ 186
4 -12.600PF16661.3; G0VCW5_NAUCC/19-212; Metallo-beta-lactamase superfamily domain  ali follow..  11  1.................................ILKFDNVTILIDPGWTSTEVSYVDCVKYWNLIPEIDVILISQPTIECLGAYTLLYENFLDSNKMEVEDIEAAFDHIQILKYSQMIDLRSKFDGL------TFFALNSGVNPGGSIWCISTYSEKLVYAPRW......................................................................................... 163
5 -10.300PF14234.4; K8GHV6_9CYAN/48-368; Domain of unknown function (DUF4336 topsan)  ali follow..  14  18...........................VPIRMTIVKLAAGGLLVYA-PVAPTAECLQLVNELVEQHEVKYIILTVSGLEHKVFVGPFARYFPTAQVFIAPGQWSFPLNLPLSPIERTQILPEYSCNAPFGDEFEYAILGPIDLGLGAEVALYHPRSRTLLVTDSIVSVPDNPRSFEALHGNGRLFVAPILQTLILNRAPQETIDWANDVASWDFHRIIPCHLDAPIDASPLQFRQAFS............... 320
6 -9.260PF17030.3; I3EIZ1_NEMP3/1-217; Putative beta-lactamase-like family  ali follow..  14  9.......................AHNGTTQDGYLMESHETSLLFDPPSKVLDSDVIEIEVIKEYPPDITGIFITNSNSLSVFFVES------DVTIYLTDYIYLQMK---YKEISRRVKIIRHNQVINFTYLSITAQAAGLSLGWIMYAVAQDKEKICAYAYGI......................................................................................... 180
7 -8.800PF13483.4; B9JRY8_AGRVS/77-244; Beta-lactamase superfamily domain  ali follow..  5...........................LGHSTFEIETPQGLTIDTD------------SGYLRSARTPDVVTMNKAHSSHYT-----LSPDPGIAQVLHGWNDAQPGEPVHHNLV--------------VGDAYIRNVATDIRSWGGDFEPNGNSIFIFEVAGLCIGHLGHLHHELTDKQFAAIGRLDVVMVPVDGGLTLGSDSMSRMVKRLRSALILPMH................................ 168
8 -7.170PF09740.7; H2RAD2_PANTR/497-603; Uncharacterized conserved protein (DUF2043 topsan)  ali follow..  11  1.........................................................................................................................................ARAPVVPYGMDLHYWGQELPTA-SQHRFWKPSEGEEEVVNADISEMLRSRHITFAGKFEPVQHRCRAPRPDLCERQDRLKCPFHGKIVPRDDEGRPLD.................. 106
9 -6.690PF01339.15; D7DPJ7_METV0/30-205; CheB methylesterase  ali follow..  12  6............................................SAGGLEAFEDFFRHCDP----IGLAFVLVPHLDPSHVSMLTEILQRSTKMPVIEAQDQTKVEARVYIIPPNREMAIIHGKLQLSVPTVSHGQRMPIDGFLRSLAEDQNENAIGIILSG........................................................................................... 121
10 -6.680PF06189.10; G0A2Y9_METMM/38-307; 5`-nucleotidase  ali follow..  10  4...................................EQHIDVPLGKGVAFPFIRRFLSLNRAFPERLPVEVVLLSRNSPEVFRSIQHYGLDIKRAAFMTGRSPHEYVPAFN-------ASLFLSASEDDVQKAIDAQYPAGVVLPSKVYDDELDNELRIAFDFDGVIADDEAESVYKRNHDLIAFQRYEASHQGIPHQPGPLAD-LFKKLAWLQALEDERRATDANYRKIIKTSIITARSAPAHERVVTTLWGV 219

FFAS is supported by the NIH grant R01-GM087218-01
1 2 2 2 4 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.