current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: TM0015 TM0015 281896 PDB-2007-09-14, from JCSG0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MPVAKKYFEIRWHGRAGQGAKSASQMLAEAALEAGKYVQAFPEYGAERTGAPMRAFNRIGDEYIRVRSAVENPDVVVVIDETLLSPAIVEGLSEDGILLVNTVKDFEFVRKKTGFNGKICVVDATDIALQEIKRGIPNTPMLGALVRVTGIVPLEAIEKRIEKMFGKKFPQEVIDANKRALRRGYEEVKCSELast
1 -5.940 VFG000682(gi:6470209) (capB) CapB, involved in Poly-gamma-glutamate synthesis [Capsule (VF0141)] [Bacillus anthracis]  ali   13  93.RLNSIPIRVNINGIRGKSTVTITGVVQEAKYKTVGKTTVVKEAADLEAEALICECMAVQDYQIIFQNKMIQANVGVIVN-DEVAEAFTATIPYNGHLVTIESEYLDYFKEVEERNTKVIVADNSRISEEFLRK---NASLALAVAEALG-IDEETAFRGMLNA............................ 306
2 -5.690 VFG000032(gi:33591345) (bplG) probable sugar transferase [LPS (VF0033)] [Bordetella pertussis Tohama I]  ali   13  15...........................................................................LLALLPLLALIAIAIKLDSPGPVFFRQERVGKDGVPFRIHKLRSMSVRQDPQAGQITVGADPRITRVGKWIRKWKLDELVQLIDVFTGSMS.......................... 105
3 -5.570 VFG006191(gi:15678016) (pilQ) type IV pilus secretin protein PilQ [Type IV pili (CVF189)] [Neisseria meningitidis MC58]  ali   12  596.......LELSASESLSKTTLANPRVLTEAKIESGYEIPFTVTSIANGGSSTNTEL-----------------------KKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVEN--GTLIVGGIYEEDNGNTLTKV................................... 726
4 -4.960 VFG001338(gi:22537319) (neuB) N-acetyl neuramic acid synthetase NeuB [Capsule (VF0274)] [Streptococcus agalactiae 2603V/R]  ali   13  5.........IAEIGCNHNGDINLAKKMVDVAVSCGVDAVKFQTFKAE------KLISKFAPKAEYQKATTGTADSQLEMTKRL-YLEMRDYAISKGVETFSTPFDEESLEFLISTDMPIYKIPSGEITNLPYLEKIGKQ----KVILSTGMAVMEEIHQAVNIL-TTEYPTPYPSLNLNVIHTLKDEFK... 193
5 -4.930 VFG000921(gi:26250138) (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]  ali   14  1......MTPWLLFGAGGKGV---GARTLELALAEQRPVVAV-----AQQGVQVFTGDACDASVVAAACRAAGPDALIISHRTVIDEAEKAGITR--MILVTSLGCGDSWPFLSERAKAAFAVREKTLAESWLQTSQLDYAILGGLLECHGFINRADVAAHIHELANAP........................ 190
6 -4.790 VFG000252(gi:15676004) (siaC/synC) polysialic acid capsule biosynthesis protein SiaC [Capsule (VF0079)] [Neisseria meningitidis MC58]  ali   12  23.........ICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCAL---------EIKLKEYVESKGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASF----PIILSTGMNSIESIKKSVEII-TNIYPTPYEDVRLGGMNDLSEAFP... 206
7 -4.780 VFG013068(gi:82778666) (shuY) shu locus protein ShuY [Shu (VF0256)] [Shigella dysenteriae Sd197]  ali   15  1......MTPWLLFGAGGKGV---GARTLELALAEQRPVVAV-----AQQGVQVFTGDACDASVVAAACRAAGPDALIISHRTVIDEAEKAGISR--MILVTSLGCGDSWPFLSDRAKAAFAVREKTLAESWLQTSQLDYAILGGLLECHGFVRRADVAAHIHELANAP........................ 190
8 -4.770 VFG001964(gi:15792754) (Cj1436c) aminotransferase [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]  ali   13  104................GNGAIEIIQAVMHN-FVGKKIIVNIPTFSSYYEFAKSETNVNLNIEHYLNFVKNENPDSVVLINPN---RYILSELKYVKNIIIDES-----------IHFAYENKDYNGINIEYLFKEFHNTIIIKSMSKDFGVAGIRIGYAIMSEDKIRGLLKNGYLWNSSGLSEYFLRLYVRK 288
9 -4.730 VFG010763(gi:52841459) (vpdB) Dot/Icm type IV secretion system effector VpdB [Dot/Icm (SS047)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali   11  18LGKLSTAKNLVFRGGGSKGIAYVGAL---QSLSEQGVLENIENVAGSSAGAMTAAIVACGGSADLMEYFCSANSLEDFVDNPLTRKLAKLFMDKKGFL.............................................................................................. 112
10 -4.670 VFG001218(gi:15600233) (pilQ) type 4 fimbrial biogenesis protein PilQ [Type IV pili (VF0082)] [Pseudomonas aeruginosa PAO1]  ali   11  542......ILDLQLSAMEKTG---NGEIVSQPKVVTSDKETAKILKGSE----------------VPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAPDYQNMLNG-VPPINKNEVNAKILVND--ETIVIGGVFSNEQSKSVEKV................................... 671

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 9 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.