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Query: gi|108885076|ref|NP_072662.2| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNLYDLLELPTTASIKEIKIAYKRLAKRYHPDVNKLGSQTFVEINNAYSILSDPNQKEKYDSMLKVNDFQNRIKNLDISVRWHENFMEELELRKNWEFDFFSSDEDFFYSPFTKNKYASFLDKDVSLAFFQLYSKGKIDHQLEKSLLKRRDVKEACQQNKNFIEVIKEQYNYFGWIEAKRYFNINVELELTQREIRDRDVVNLPLKIKVINNDFPNQLWYEIYKNYSFRLSWDIKNGEIAEFFNKGNRALGWKGDLIVRMKVVNKVNKRLRIFSSFFENDKSKLWFLVPNDKQSNPNKGVFNYKTQHFIDLast
1 -6.680PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  17  267....ETLAVEQKNFSKAKQ-AYRILSLKY-PEKSGFFADQIRAIEKLQE..................................................................................................................................................................................................................................................................... 312
2 -3.740PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  12  131.......AVSRVVTPDDLDNAGNVLFKLNDADKDE------EKSLRAALTLHTIRETDLFEIF....................................................................................................................................................................................................................................................... 180
3 -3.610PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  21  37LEEVIILNKIKFTSDLE-RRRYLILTRKVWP---KLASERLSELNARLASIKSKSERRKY.......................................................................................................................................................................................................................................................... 97
4 -3.460PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  14  74....KQCSVKPKSPADELEAYFFDVFQDY--DEERVYPSDIKKIIQWYNILAE................................................................................................................................................................................................................................................................. 120
5 -3.080PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  21  71IVYYD---------DEELDRYAGVLPEEY----NTEAVEEFEEIEQALFIVSEHRIQHRHD......................................................................................................................................................................................................................................................... 146
6 -2.900PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  11  195.SVYPLFLCLLMAFSATVYESMQVFVPDFNPTLSPFKVPFILSV--ALAVLDDLFRQLTPAA........................................................................................................................................................................................................................................................ 270
7 -2.630PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  57....RLVGWDTYRRLDLLADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGEVDSIWLTRDGGNLRAIGNIRVELDGQTVLDTPVQSLVDGQLGAPFVAGESPGGDYIKVPMPYRRSMR-----ISVESHLEYYHVDYRQFPTAEGVSTFSPADPA-VDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASI---SALRLYLPAPADQGLRLRIEFDGRTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMPFARSA---RVSLANTGAGP 363
8 -2.630PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  11  44....KYLQLSSQ-QNEQVASICDYFQEQMKVSSKKNSDQKVRNAVYGNLTLT-EKQYSDYLRL....................................................................................................................................................................................................................................................... 107
9 -2.620PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  12  42..........TKITVKELPQVVKSTLSKDYEGTIVKEAFVAEK-GKVYKI-STEEITVLLNEKGE..................................................................................................................................................................................................................................................... 105
10 -2.520PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  17  15...YQVLA-SSAITYEEMLHAIEGLLKYYG------NSHLADHFAYLAATAFDGSYFAIYEALAA..................................................................................................................................................................................................................................................... 72

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 6 6 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.