current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280
# Score Template Links and tools%idFirst NFLGNKKQFSDQFEKEKNDESFQKLMKKTSPFILRRTKNKVLKELPKKIITDIYVELSEEHQKLYDKQKTDGLKEIKESDAKNALNILSLILKLRHICSLVKDNDVNDFEDNSKANAALNIIYEALENKRKVILFTQFLDVIDCFKQTLKNQKIDHLVFDGRKTVKNRNTIIQKFNSAKEPCVMLASLKAGGVGINLTAAEVVIHFDVWWNSAVENQATDRAHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTLVEDVNFFKSLSHEELLKLFELast
1 -4.130PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;  ali follow..  10  7......................................................................................................................................FECKIRYEKVMENGMQKKVTEPYLVDALSFTEAEARIIEEMTPFISGEFTVSDIKRANYSELFPSDEE----DRWFKCKLIFITLDE--KSGAEKKTSTQVLVQAADLRDAVKKLDEGMKGTMADY------QIGMVSETPLMDVYP 143
2 -3.420PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  4................................................................................ERLFIYCLLAGTSLLASCNS---------------EDMTDNPVETLSEGMYPLTFTAMQGEVVATPQT-----------RVSDYDDTDGKHKSKWDGGEVIGVKIYTLDSDGKPTTSTSNIPAYWQS--WYPNTADISLTGQDNTGNKFPYVLKQLNLEHQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIP... 202
3 -3.190PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  1........................................LQEEVNQKVISLSIQGVKITASVLKAAVRKFLEMDNRRKQKATQVKMAEKTGRAQEKGREKARKKIEKKKPHGKQT-----IKQLNAQGVQLSNIKITDENIKSFDRVARKYGIDYSLKKEVGADPPKYLVF--FKAKDVDVM.................................................................................................. 136
4 -3.100PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  11  77............LEVTTDSVTMECLPIKDTYIALYKGDRVVVAEFPADSVDSVWVKLAHTQEEQGWIRETELKESFVPTDSISQAIHFFSDTHASYFMIIFALFVGVYLFRAFRRKQLQLVYFNDIDSVYPLFLMAFSATVYESMQVFVPDTWEHFYF----------NPTLSPFKVPFILSVFLLSI------LFLIVALAVL............................................................................. 259
5 -2.650HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  11  9................MARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVIGF------LKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSL-AICSQLFKIRPLPTQARWILLALWLISF----CGVYIHQSGMLYDWHNYWN...................................................................... 197
6 -2.520HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  12  73..............................................................................................................................................................LDKTDPALRRREIFPMTEEGRTAVAQYLNDAYNAEPERWSAHPSILDCEPWTPPAPEPDAETQ............................................................ 135
7 -2.450PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  17  166......................................................................................LVKILNKNLPNLWGEKFTFTFKEIKFKKINFFSSIFLSFISIFALTITFAYNSTFLNLAQ---------------------RINTIRPNPNPNPNEIFNFDLN------NLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYV---INKNSVKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEKF..... 328
8 -2.450PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  13  46............................................................................................................................................................................................................................YERYLQEKHPHEYVRLIWADELAALLESVQRECEEREAVLVRE.................. 88
9 -2.260PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  10  1..........................................................................................LEKIISISGRPGLFEVHTQTRTG-------VVATSLVDGKRINANAR-VSLLSEINIYGLEKEVPL------------QEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYD-----------EERVYPSDIKKIIQWYNILAEKVPQVFKAETAEEESQ.......................... 136
10 -2.180PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  10  20...............................................................CYSSIMGPI--NFEKAKKEREQAVIARLIDIRKA-----------------------------QQEYRSLHHGMYTEHFDTLIDFVKNQKLPFVMKVGQLTDDQLESGLTEKKNKAKKTGKYDEVKKNGLENFKRDTMWVAVMDTIYPKGFNADSMKYI---GAIFEMNVKNDTAKSGAPVYLFEVKAPYETYLGGL..................... 191

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 4 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.