current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650
# Score Template Links and tools%idFirst MEENNKANIYDSSSIKVLEGLEAVRKRPGMYIGSTGEEGLHHMIWEIVDNSIDEAMGGFASFVKLTLEDNFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLHGVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSEKEHGTIVEFVPDFSVMEKSDYKQTVIVSRLQQLAFLNKGIRIDFVDNRKQNPQSFSWKYDGGLVEYIHHLNNEKEPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSNFEQIFNNAEISALVMAIGCGIKPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQNPNVKFGLQRYKGLGEMDALQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEKNARSVKNIDILast
1 -3.120PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  45...........................................................................................................................................................................................................................................................................................................................................................................................................EGELNPDMKAKIAELGKTDPKAAQELYRSVSYHVDHGNGLDCYKV-GPTLGGGTTALMA---------GDTIVYPYCYATQEILDNGPLRFTVKLVYNPLVVKGDSTIIETRIITLDA-----GSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANGYMTYVDPTDNAGGDNGKIFVGAAFPTLVKEAKAPEKEKKELRGGADGHVLAISEYEPGADFTYYWGAAWSKAIKDSAAWNAYMADFAQKVR. 287
2 -3.010HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  19  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................LQTNY-KQNQEKAWQVIKNTNIIQIWEDAGAKIN----VGSLRTGLLMKHRDIDFH-IYSSPLNLTDSFQAMARLAEN-------PSIKRIECANLLHTAEACIEWHAWYQNEENELWQMSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKEYYQAVIRDGVRDYSGFKE........... 188
3 -3.000PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  11  5.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................DGSFPPVGRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGETGSLYLCTTAFLPLGLPASDDFWSQPDA................................................................................... 118
4 -2.510PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  15  12.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RSMEISEENLVTIEKYSLFQHLIDSNGI---DEAVLEKLKLNIRSLIASQEEDSKDLLDLCIDVIYH...................................................................................................................... 76
5 -2.500PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  5...........................................................................................................................................................................................................................................................................................................................................................................................................................................DSRHSKYVIRIICEGEKTEPLFFTSLCDKLLD----DRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAF----------------------EEAEKLIDDKKVNIAFSSRSFEYYL.............................................................................. 149
6 -2.390PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  42.AAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEHGAGEVDSI---DGQTVLDTPVQSLVDGQLGAPFVWPLVESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRF------------------------------------------------------AAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRI-EFDG-------RTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMP-FARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPTILGQDWPFADEQTIRGQRTRTAFSDNAPYFLEGAERVYTDGAASPQWYGTGTEDLYEG-DPLNGQPDQRTATAGCADYCVAVYRIMPA------------EAIGYHSALRFG-GKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPL.................................................................................................... 559
7 -2.370PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  10  59...............................................................................................................................................................................................................................................................................................................NDWPEFLQRIIKAGSSPIQHDIMLLG--MSRHVRCLYGGKYHHPSLSASGKGILSYIRL-------LVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEA--------------------PQMPPNRMFLISGNNTGTGILQN------------------IMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEEVKKSYLSVLISGTPSQVEDGSYSRQLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEK-----LSVIKTHGIHTLQLTDEQKEEI------DTVFSDLFERSSVANGREMYSFVARLAVNLCRI.. 369
8 -2.290PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  13  13....................................................................................................................................................................................................................................................................................................................................................................................................................................................LFEVHTQTRTGVVATSLVDGKRINANARNQVSLLSEINIYGLEKEVPLQEVLTMI-CSVKPKSPADELEAYFFDVFQDYDEERVYPSDIIIQWY........................................................................................................................ 115
9 -2.180HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  11...................................................................................................................................................................................................................................................................................................................................................................................LQQRTLLQIEYYTEKEAFRKQTEQMGMQRKVKRGDAWFPLRIGKSFYNSLNQAIEVFRTEDQDIEHNFEFGRTKTAQTDGKTEKKMLKYFSFTGTVSYVDGDRMVITVPDSAPLLELQQADVPVGVQLSFDETSYKMMFTMKAKNNRLAYLRDLFYS.......................................................................................................................... 182
10 -1.970PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  15  6...............VLFERLSRSSFRRRFRLGVQEQQYLANKGMETILEHGKDFIAQRL----------APAEIPNDGKQTPCKGHP---------VFLAQHATGTCCRGCIEK----HRIGKSLSQEEQAYILDVIAHWLDLQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEIE...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 150

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 4 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.