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Query: gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLDPNKLRNNYDFFKKKLLERNVNEQLLNQFIQTDKLMRKNLQQLELANQKQSLLAKQVAKQKDNKKLLAESKELKQKIENLNNAYKDSQNISQDLLLNFPNIAHESVPVGKNESANLELLKEGRKPVFDFKPLPHRELCEKLNLVAFDKATKISGTRFVAYTDKAAKLLRAITNLMIDLNKSKYQEWNLPVVINELSLRSTGQLPKFKDDVFKLENTRYYLSPTLEVQLINLHANEIFNEEDLPKYYTATGINFRQEAGSAGKQTKGTIRLHQFQKTELVKFCKPENAINELEAMVRDAEQILKALKLPFRRLLLCTGDMGFSAEKTYDLEVWMAASNEYREVSSCSSCGDFQARRAMIRYKDINNGKNSYVATLNGTALSIDRIFAAILENFQTKDGKILIPQALKKYLDFDTIKLast
1 -3.460PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  1....................................................................................................................................................................................................................MKIERLFIYCLLAGTSLLASCNSEDMLSEGMYPLTFTA-EVVATPQTRVSDYDDTDGKHKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPA------------QSTASQTVYGWYPNTAD--SLTGQDNTGNKFPYVLSKQYSYKENVQLNLEHQLYGTVIPQGDKTYLATRKVGDYYTAMLAPDTK.......... 227
2 -3.440PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  2............................................................................................................................................................HKIKQMIKYIATLLLTVLFVACNNGKGQQPSEENEDPKAKEILQGIWLDDETETPLMRIIGDTIYYSDAQSAPVYFKILKDTLVTHYQIDKQSEYSFWFHSLADNIIKLHKSEDPNDTLAFSFKSVEIIPTYTEVT------KKDSVVMFDGVRYRAYVYINPSQMKVVKTTYSED-------------GISMDNIYYDNVMHICVYEGKKTKQMFVDVIPTDFLQQAILSDMNFIGIDRKG-LVCIPES........... 249
3 -2.940PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  15  1..............................................................................................................................................................................................................................................................FYIDKGGPEAHFKRYIEHVKGKKTGLFITLGADPAGEHGESMLKVGRELLNEGGNEILAEFICQGAIDPKVIEEMEMAAKMGDKATWKQASTHPDENDLKNARKAFE........................................................ 119
4 -2.920HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  14  3.................................................................................................................................................................................................................................VDTKLINLKLWGYITMKKM------IAYC-------------GLD--------KCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCGDCLDLER-----TVGEILENNPSALKNLKG....................................... 127
5 -2.470HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  15  12......................................................................................................................................................................................................................................PLMFFDRAVNAQRLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIRAKEGMGGLILE-LSDVVAQFYAYLELHYMMSSLMLGE................................................................................................. 124
6 -2.140HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  15  3..............................................................................................................................................................................................................................................................................................................YLHARGLFHVLLLICNRELLLIGKRK-DEDDMAKSTKTYKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRL----CQIGGAVESVLGCPIEEEDLPKLIGFLKR........ 113
7 -2.140PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  10  122..............................................................................................................................................................................................................DGVIAMMERNDGPTLVVTDSQAVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEA-----NHNRITSACNDI--MVQIPNKLEAALGGKLQIEHAFGREFELESGGMDGLKLAIHCGGCM-IDAQKMQQRMKDLHEAG-------------VPVTNYGVFFSWAAWPD--ALRRALEPW....... 308
8 -2.090HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  3.............................................................................................................................................................................................................TNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLV-------------GSLRTGLLMKHR--DIDFHIYSSPLNLTDSFQ--------AMARLAENPSIKRIECANYQNEENELWQMDMIHIREGSRYDAQRISEIMTDEIRETILRLKYETPETEKIIGV---------EYYQAVIRD------GVRDYSGFKEWRKQHPVT 196
9 -2.040PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;  ali follow..  10  3..................................................................................................................................................................................................................................................................................................AAVRKQVRGAISFFLVALGICLAVSCTYRKDERILYRQVPHGRWQKRDRSYSLELLIRHDNRYEYRDLALAYEVSVGERLIFADSVDGKGVAKQQNRFRLPISARPYSGLYKI--ELKHNMRVPTLS 151
10 -2.020PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  120........................................................................................................................................................................YNDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIK---CILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEK------SAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSYPQEKNSLFETYPGFSDWIN-GKVSSIGSFQKELVYKYCSGGIIGEDGKSHKI......................................... 320

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.