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Query: gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta` (MG_007) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLTTTHALLIIQRKGSFLKPFLDNYLTSIVCENKNGCKKCINCLEILNNKYNSLYWFDQINPFKRENALQLARIFNRERTSVNNKNIYLIEEIEKLSSNSINSLLRLVEDSPINSYGIFTTKNESLILSTFLSRVQKVVLKKASKVPFKVSKNDQEIITSFFTVDEQIEAIENGSFNRFKIILDACLNKKTGTEQIYHAWQIFRDFSNSEIAQLITLIINKTENIDKKSILFNCLKVLPYNPPKSTLFANLVSWLast
1 -3.980PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  11  2...........................................................................QSEDSRHSKYVIRIICEGEKTEPLFFTSLCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKEGVDEAWAVFDK--EHPARKDAFEEAEKLIDDKKVNIAFSLLLHFEYLYHPFHATECGERIDGKKV............... 174
2 -3.370HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  23  85.........................CGIRQCALEKGVATCGDCLDL................................................................................................................................................................................................................ 105
3 -3.350PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  10  21..............................CAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIYRKERYITIQEQDYIRDS.................................................................................................................... 128
4 -2.860HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  11....................WLLGAAFMVGCGKQVPEN-------IQPDRMENILY----------DYHLSISMGNNLSYSDNYQKEAYKNYVHHITEAEFDSSMVWYTRHTEELASLY-----KKLGERFRSEKKHMQELLALRENKPAVSLPGDTVDVWYDRKLYWLTDVPLANKVTFEIPADSNFKAKDAFLWSADYIFLSEGERRATMGFNILFDNDSVVGRVKDITCSGVQTLYIKPDSAFAIKSVNGF 226
5 -2.770PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  252.........................................................PNLEDRFQPSDSLMTETLA---------RVYVEQKNFSKAKQAYRIL--SLKYPEKSGFFADQIRAIEKLQEN............................................................................................................................ 313
6 -2.750PB006101 JCVI_PEP_1096697844517 /source_dna_id=JCVI_ORF_1096697844516 /offset=0 /translation_table=11 /length=371 /full_length=371  ali follow..  11  2....................LISFSFLLYSCDEKPK-ITNPSFLPNASGENNEMLIVMDSTKFKGKIGRELVDIYSSYISGLPQPEPRY--DLRYIKPRKFNSILKHAK----NIVVAFSLEGNSLDSEILRRNFNSESLDKIQSDS-SLFYFVRRNQYARGQVVLYLFSENDDDLYSKIKRNRNSILKFFDDELKKRVDTEIFRKVENNLMDKIF...................................... 191
7 -2.740PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  20...........................................LRTDDGLRLEILSPGWWNNEEGPDFKHAEFFLEGKGLIRGSVEIHVFAS-HENQKTYDAVCLHVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEIIETIDVGSYIGNKQVIPGYCNLEMRKQKITQQWIGGFLDYEKWIENKPFERVLYEAIMESLGKNNKKPFLMLASLV.................................... 213
8 -2.520PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  17  6.....................................................................................NINLANMLFHIDENAYQKLLRYLEAVKRS---FAGTAGSDEIIADIEARIAELFYEKMENERQVITQKEVDAV................................................................................................ 75
9 -2.400HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  8..........................................CKKARQLRVYKAFGGRRHTEGRCSSIDE---------NGKSRHSVWLSDDVAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLGGDMDMTRDEYSKMRGSSVREVSATHGTISFKDVMV..................................................... 162
10 -2.380HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  15  132.............NGILLTTPARTLLDCAVFPFPQA-----------------LPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVT--LLKYANPLSENGGESLMRGFGSSCWQC........................................................................................................................................... 221

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 4 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.