current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440
# Score Template Links and tools%idFirst MKSEINIFALATAPFNSALHIIRFSGPDVYEILNKITNKKITRKGMQIQRTWIVDENNKRIDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGVYAKPGEFTQRSFLNGKMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEYLDEQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLVIYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDLITNKFENSISAKQKDIKELVDLLTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQDILKLLGKDVGFDLVNEIFNNFCLGKLast
1 -2.950PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  10  19........NLRTDDGLR-LEILS-EGPDFKHAEFFL---------------------------------EGKGLIRGS--VEIHVHKDAVCLHVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEIIETIDVGSQKITQQWIGGFLDYAGDERILQKAKKYEKWIENKPFERVLYEAIMESLGYKNNKKPFLMLASLVTAETIQSFVPEYTPAQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYFDRIIKPKIHQTPLTRESWSYTGIRPANFPDRRIAIANILSEHLDNGLILRIFQKRDDTKKNTRGFKSFVNEFLSPFLETHDAYWSYRYTPGGKKLNKPQKLLGKERTSNIFVNVIIP---LVYARKHNDKALEERLHYIYRNYTPHPSTSVTKFMGTRIFGTSMVSNKVIHSARRQQGLYQLFKDFCEND 463
2 -2.900PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;  ali follow..  14  48LNFEDTIMALFESYDRR-TPVLEQYGFASFEEALEYCKERN-------------------VNPYDIVKETQPIAF--ENASWAYVLGAAIALKEDAKNAAEAAEYIGQPGSVADQCFLAGHESYAAAEGAIKIAMNANKVRHHPLRVILNGLGKDAAYMIAR--INGFNYVQTQFNYETGELDVVSERRFSTSQRGDINCYGADDVREGVAIMHREEVDISITGNPVAGTYKKERLEANQAYFSVASGGGTGRTLHPDNVAAGPASYGMTDTAGSSSVPAHVEMMGL........................................................................................................................................................... 362
3 -2.880HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  12  31........................................................................SSIDENGKSRHSVWLSDDVWQEVDAFYKLDNCP--IRNEFAEKA-LRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLGGDMDMTRDEYSKMRGSSVRE.......................................................................................................................................................................................................................................................... 147
4 -2.800PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  11  286............................................................................................................................VDFSYYLDYLNLMRDLNIAIDSENII--MPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNY-----AFIVPKQASDLLTEGKAL-------VGGSNYIKQHIEGKTTIIFVRDKQDLEKSLYTLEYKN---QIYQLRGKHNCDPTKDVQMAANKWAKLLKSKT............................................................................................................................................... 447
5 -2.150PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  2..............................................................................................................................................................................IEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGEL--------------------TAETMPLLTGEQHSLLA-------QIFRDEVMFGGFCQLIQNGYGDNPFAKVMRLWGAEDFSKLVYKAKKIY............................................................................................................................................. 106
6 -1.930PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  13  18.......................................................................................................................GKNIQKIVDWILTIEDREQRTRYANTCVELMRQLNPGVRDTEE--LFIMSNFKLDVDTPYPMPDIAVLGRKPERVPYNHNKLK------HYGKNINLLIEQAILKEDGAEKEDAIIYLGRLMKRLYST----NKENVDDEVIVEHL................................................................................................................................................................................. 162
7 -1.910PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  10  18........................................................................EHVKGKKTGLFITLGAD-MLKVGRELLNEGGNEIL--AEFICQ----GAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQASTH-ENDLKNARKAFE.............................................................................................................................................................................................................................................................................. 119
8 -1.840PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  12  78............................................................................................................................NNANEYNALLNGDAADAAAVKAEQVKD--SKTVESLGKELKASAPEYEGC--------VAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSDGKVAD............................................................................................................................................................................................ 197
9 -1.720PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  10  107.........................................................................AIMFEDT----------------------------NGDYD----YN---DLIIHVKNTASNHAYQHQTIEIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKT---------------SAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSYPQEKNSLFETYPGFSD-----WINGKVSSIGSFQKELVYKYCSGGIIGEDGKSDL........................................................................................................... 326
10 -1.680PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  12  32...............................................................AILMPMILVVSFGN-------CFGKFAIVKKVYEVNDGFNIGSGLLAKFIKTLMYFPFSILYFVGFFFDLILFNL------------------------------------IEFGNNPVGYNEYDENGKYVKAYEENGEKLLLSYS-----DFGKRLDIQFAKEGNSQNLI-VFRAEPGKFFVEKDGKLEEIVVSSETVGSKTILKMAEQGKLKSTKVVDTKTLNDLEAKLVSES................................................................................................................................................ 220

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 4 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.