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Query: gi|12044859|ref|NP_072669.1| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEYFDAHCHLNCEPLLSEIEKSIANFKLINLKANVVGTDLDNSKIAVELAKKYPDLLKATIGIHPNDVHLVDFKKTKKQLNELLINNRNFISCIGEYGFDYHYTTEFIELQNKFFEMQFEIAETNKLVHMLHIRDAHEKIYEILTRLKPTQPVIFHCFSQDINIAKKLLSLKDLNIDIFFSIPGIVTFKNAQALHEALKIIPSELLLSETDSPWLTPSPFRGKVNWPEYVVHTVSTVAEIKKIEIAEMKRIIVKNAKKLFWHLast
1 -3.490PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  12  4..................................................................................................................FKEKIQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCF-GKFAIVKKVYEVND------FNIGSGLLAKFIKTLVMYFPFSILYFVGFFFDLILFNLIEFSGNNPVGYNEYDENGKYVKAYEENGEKLLLSYSDFGKRL... 143
2 -3.110PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  10  170...............................................................HDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNE------------KTQGICVFGSGYYKK--------------ADTLILSARIGDEIIETVEVDLRTLEVVQC----------HGKHNQDT-----HERIIDLVNKNANLIRERMKA........ 322
3 -2.620HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  9.........................................................................DELLERIRDIRASEKRKVKEIFALSVDYDSKSQVAQSFFKSVQNKLEYAGHTAPELIAKRADASKDNMGLTSFKGVKVRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKL--GDFLRFNGREVLE----FGTVKREVAEKLALEQYEQYDTHRRALEAADDVDELTA.... 193
4 -2.340HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  18.................................................................................................MLHYLQNKNSFSGNEDGMRYLITPGKRSVPDPDGGEEAKKEEAILTVDLWPEP-----WTLDKTDPALRRREIFPMTEEGRTAVAQYL-----NDAYNAEPERWSAHPSILDCE-PWTPPAPEPDAETQ.................................... 135
5 -2.280HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  12  70...............................................................................................EKALRQYCGRLHAERTGAYLPRALQGVLEGTL------GVFGERLGRLLLKLAVEHNMTNHLLGGDMDMTRDEYSMRGSSVREVSATHGTISFKDVMVFYK.................................................................. 165
6 -2.180PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  16  332.......................................................................................................HEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASD-----LLTEGKALS---HCV-GGSNYIKQHIE----------GKTTIIFVRDKQDLEKSLYTLEYKN-IYQL----------RGKHNCTKDVQMAANKWAKLLKSKTKVLQN............ 452
7 -2.180HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  25  89...........................................................................................................................................................................GNIIIAIYGLCVGIFVGCIAVALAEILHTFPIKRMKLRAGLGIIVISMAIGK....................................... 142
8 -2.080PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  89..................................................................DKPKESIQDYEQEYENQLKDILETIIGVEDVSIVVNVDATSLKIFEKNRKTQETSTNETD---IVIIKNGDKETPVVVQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTRVLDVPSHRVAVAPKKMK..................................................................... 228
9 -1.930PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  3..................................................................................................................................IDKGGPEAHFKRYIKEHVKGKKTGLFITLGALKVGRELLNEGGNEILAEFICQGAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQASTHPDE.................................... 108
10 -1.810HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  15.............................................................................................VGSLYWEKESNAALFDYERKFIRSGLDIS-----PIIMPISQYRNTPYRFLENRTDCFKGLPGLFADSLTFGNQIINEWFASKGLSGE-MGALEFEPSSPINGMNESSVLHIEELTELAKSVF----TDRMAFQVQLRQEGRNILDI...................... 168

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.