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Query: gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVRTERLNELFFVYHKNLKNQSKSKYSRAVNYLKRRGFNLQDFLKVGGGVGYLQNKEWLNLPLYSFDGNLIGFLNRKVSYKKEFLYTPFNKPPSKSEAFVGLRELVIKDNSIYLVEGDFDWLAFRKAGILNSLPLCGLTISNQQVQWLKQKKIKKIFICFDNDLAGKNGAKNLKEYLTKQGFITKVIEIKAAAKDWNDLFLLNNSNWSAVLTNQLLFLast
1 -3.050PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  12  2.....EGHEEVRTGWSR---------WDSLWPFL-----------------NFLKGVFLLRIAVVDGQGGGIG--RQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAI-TGSLAIILADAMLG-ELTPAMAAAIAASPARKFLL........................................................... 136
2 -3.000PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  10........................................................KYVIRIICEGEKTEPLFF--TSLCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEARKDAFEEAEKLIDDKKVNIAF............................... 140
3 -2.820PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  12  111..LQSRQQSLLLLCYDHVRLEHHLSH-PGIRTLLHKAGYKDDADCEGMLLELRSRIGGNNSFP--HEIGLFIGY-AFMGLVRLPFTCQRLWKIYARSLALAEQYRCCRNKMGAILARG.................................................................................................... 231
4 -2.360PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  7....................................................YQEKINEIISPLSR-------------SAFAYYRFTYEGTFFDQDVLVNKIKVTPRSRGERVF-EGYI--IIEDLWAIHSLNLKTSLLGFQIQATQQYAPVAENVWM-XXXXXXXXXXXXXYLASTRDYEVTMNP............................... 132
5 -2.260HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  11  118......................................................................................................LNRIYINRIPTRKHNGI-TLLDCAVFPFPQALPIYDSALRKSLTT------IEEVQSLMIQSVCDEVSVTKLLKYA........................................ 193
6 -2.210PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  2.....SNIEQAYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCYEVEYQNGTVSFLGEGDLCVTDLSRQVFVSSRLPLRKYRGVLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQYWIKTMEL............................ 190
7 -2.090PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  11  4...........................................................TQFKVQAEQQRLEAVTAQ-VADVEQSLEKTKAAAEKQKKKLEALQKETKAARATALTVQDIEAMG------KKATFGNNITLTPDECRTLKDYAVSSFAEKAEKLKYKQKYEQAEKSASV-EALNEKYLELKKKAQPYLDALEIASEKVRAFLDA.... 155
8 -1.910HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  4................................................................................................................VFCVEGFVDVFIVHIREICFPVLFFCHFSVSDTFANKAASGGNVVSENTIAVHEQTDAYIAMPQLPYLPDAELAGMGGQLHSLTYSRIQRISTTEYIFSLKD.... 106
9 -1.870PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  11  1.......................................................................................................................MIRRSSEEVLQFSDMKSDSPDLKTAMLGRIRADEPRKVWTPSDVDLASRDAVDKTLQRLTKAEALRRI............................... 69
10 -1.860PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  10............................................................................KTMWGVYWKLHDKRKRLVERLKGYLDGLPPETCRRIVLGMLAAFAVLALYTRAAYDIGRNDGSRMETGHAGRVELPTPAETDNHLTPYLYGTE................................................. 104

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.