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Query: gi|12044865|ref|NP_072675.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NPILLAQGLGFIFPITSSNGRAVDSIYSLIYPTNLNVFIRLTIVSVTVFVAYALIFVFNVAQNYVGIKLYQQTCATLRWKAYLKMQSMSTSFFDTQNNGDLMSRLTNDMYNIDNLFTQAGGQAIQSLFNILTTSVLIFLLSPVIALISLSILATLITFSFAFLKKSKTSYSQVQNNLGDMSGYIEEVLTNHKVVHVLKLQEIMIKDFDQYNKSMIKPTVRGNTYSIFLFSWFGFISNITYLVSISIATAFSVNSIPSFGISVINYSFMLSYIASLRQITLALDQIFTLWNLVQLGVVSAERVFKVLDLNVEKDTATIDKLPDIKGNIRFENVAFGYNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDNFEISDVTKKAWREKISIVLQDSFLFSGTIKENIRLGRQDATDDEIIAACKTANAHDFIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLIQESIGRLMKNKTSFIISHRLSIIRDATLIMVINDGKVLEMGNHDQLMKQNGFYARLKQSSVRLast
1 -4.640PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  11  58..................................................................................................................................................................................................................................................................................................................................................................................................................................................SGAKLAEAKEACVTAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTV-LDAAAVKLNEQADWYLSKAVRAVVESKAAKRLDDA-AKLDEASKLLADSDGKVADNA..................... 199
2 -3.750HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  14  1.........................................................................................................................................................................................................................................................................................................................................................................VKVEVHYFDELLERIRDIRASEKRV--RKVKEIFALSV--DYDSKSQVAQSFFKSVQNKLEYAATGHTAPELI--AKRADASKDNMGLTSFKGVKV----------RRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKL-----DFLRFNGREVLENFGTVKREVAEKLALEQYEQYDTHRRALEA 184
3 -3.080HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  7..............................................................................................................................................................................................................................................................................................................................................................................................DVKLWGESVGSLYWEKESNAALFDYERKFIRSGLDISPIIMPISQYRNTPYRFLENRTDCFKFADSLPDTFGNQIINEWFASKGLSGEEITPLDRLCY-----VGKRGMGALEFEPSEELTELAKSVFTDRMAF----QVQLRQEGRNILDI-----LKVGT.................... 173
4 -2.940PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  67...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................QTGTSYKVTRMAYNLWNGYVEEGTESLTTPSSLFACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESKEHSEI................ 154
5 -2.870PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  14  6....................................................................................................................................................................................................................................................................................................................................................................................................FEFNELPYPTL-ARFGLTQEMIEDLPLCILKEIGKGGYSMRVTNENGEVIESRSRFAFIRMDSGYPTLKSSPLECYNEEQQKQLLDGKSIIADKAFVQIDEETKQVMYVPTPIIARNLKVLAEVMH--LGTVEVNGMQHGEPLTVAVDGEPVTVG---DLHNKTGI.......... 185
6 -2.460PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  3.................................................................................................................................................................................................................................................................................................................................................................KIISISGRPG---------LFEVHTQTRTGVVATSLVDGKRINANARNQVS-LLSEINIYGLEVLTMIH--KEEGKQCSVKPKSPADELEAYFFDVFQDYDEE------RVYPSDIKKIIQWYNILAEKVPQVFKAETAEEESQEEVAVKEETSS........................................................ 147
7 -2.400PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  13  269......................................................................................................................................................................................................................................................................................................................................................................................................PEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNI-AIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKT----IDNYAFIVPKQASDLLTEGKAL-SNYIKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQRGKHNCDPTKD--WAKLLKSKTK 448
8 -2.390PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  12......................................................................................................................................................................................................................................................................................................................................................FKRYIKEHVKGKKTGLFITLGADPAGGRELLNEGGNEILAEFICQGAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQASTHPDENDLKNARKAFE........................................................................................................................... 119
9 -1.790PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  13  65..........................................................................................................................................................................................................................................................................................................LQRIIKAGSSPIQHDIMLLGALTALGACMS-RHVRCLYGGKY---------HHPSLQCFVVAPSASGKGILSYIRLLV------------EPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGILQNIMD------SDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEYREVKKSYLSVLISGTPSQVQT-----FIPT---AEDGSYSRQL............... 279
10 -1.770PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  116....................................................................................................................................................................................................................................................................................................................................GDYDYNDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKL-----------------GCILSDGSTHMISDDVRTDLFG----GRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKPYGLAVSNGNGTFSYPQEKNLFETYPGFSDKVSSIGSFQKELVYKYCSGGIIGEDGKSHKIWDYLDL................ 326

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.