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Query: gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAGKRDYYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEAYEVLSDEEKRKLYDQFGHEGLNASGFHEAGFNPFDIFNSVFGEGFSFGMDGDSPFDFIFNRSKKRQQQIVVPYNLDIALVIEINFFEMTNGCNKTIKYERKVSCHSCNGFGAEGGESGLDLCKDCNGNGFVIKNQRSIFGTIQSQVLCSTCNGQGKQIKVKCKTCRSNKYTVTNQIKEINIPAGMYSGEALVDESGGNEFKGHYGKLIIQVNVLASKIFKRSDNNVIANVLVDPMVAIVGGVIELPTLEGIKEFNIRPGTKSGEQIVIPNGGIKFSKSFKRKAGDLIIIISYARPCEYTNLELKKLREFIKPNQEVKQYLNTLKNEYKTLast
1 -4.150HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  1..............................................................................................................................................MQVDTKLINLKLWGYITMKKMIAYCG------------DCEKCDAYIATINDNQELRKKTAKLINCQGCRVDGIKTVFCDNMCGIRQCALEKG.......................................................................................................................................................... 95
2 -3.490PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  17  42...............TKITVKELPQVVKSTLSKDYEGTIVKEAFVAEKENGKVYKIVTAIKEDQSTEEITVLLNEKGE....................................................................................................................................................................................................................................................................................................................... 105
3 -3.430HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  18  25..............DDVNVTLTPSEEVVNAFQQKYPDVKNVKWEILVGAYEAEFIYENGQHIVLDKVEAQAYITQGGK....................................................................................................................................................................................................................................................................................................................... 93
4 -3.310PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  18  240IKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVY---------------EQKNFSKAKQAYRILS-PEKSGFF............................................................................................................................................................................................................................................................................................................................ 300
5 -2.280PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  14  40MMQMQTNQMRALMLDDATAAKPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQ......................................................................................................................................................................................................................................................................................................................... 118
6 -2.250PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  12  39.ARNQVSLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDYPSDIKKIIQW............................................................................................................................................................................................................................................................................................................................ 114
7 -2.240PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  10  19....................................................................................................................................................................................EASKVEGNGNIITKEISVDNYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDENNNGRLAIRIQDGTR--KPTQYVIEGSSKTLKYLKTSGPM-----DFEAQNAFSEDQLEI-KISGSSDVKFPNVKLRLGEFSVSGSGCKNLTSKVSGSGDITLKGKAD.................................... 202
8 -2.240PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  11  4......................................................................................................................................................................................PVCSPWGR--------FGCYLLLFACP-------IIFASIMKKEFIGRTAKSLSLALAIFSGC---GSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLE-SSLGGTVTFLL---NRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLKTDRFWQQPRIEDF.. 188
9 -2.230PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  1........................................................................................................................................MTHMARKPLGKYRQREIRTVGLMIALYEKRHPET---------DASTQYNDLFSYAIKRLERCHFGEDKPACKHCP-----------HCYQPARREAIKAI........................................................................................................................................................ 82
10 -2.180PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  11  58..............NAERADRGYSSAWHKGRNKHHLEYAVSKPGDDKTHTKMEGMKMPIRYEMFID................................................................................................................................................................................................................................................................................................................................... 117

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.