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Query: gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37], from M.genitalium

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSEINIFALATAPFNSALHIIRFSGPDVYEILNKITNKKITRKGMQIQRTWIVDENNKRIDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGVYAKPGEFTQRSFLNGKMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEYLDEQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLVIYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDLITNKFENSISAKQKDIKELVDLLTKYINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQDILKLLGKDVGFDLVNEIFNNFCLGKLast
1 -119.0003gee_A mol:protein length:476 tRNA modification GTPase mnmE  ali model follow..  26  13.VPGHPIAAIATPVGVGALAIVRISGAGVLDLADRVFRKVAEAAGYTAHFGRLYDG-EEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNGCRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELPAAKFLTVANKLDRAANEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALELIAHESETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCIGK 476
2 -119.0001xzp_A mol:protein length:482 Probable tRNA modification GTPase trmE  ali model follow..  31  25.KLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHE-NGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIET--NTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKHMVKISALKGEGLEKLEESIYRETQEIFER-GSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 476
3 -118.0003geh_A mol:protein length:462 tRNA modification GTPase mnmE  ali model follow..  28  4MAITGTIAAIATAPQQGSVGIVRVSGSQAIAIAQTLFDAPQVWESHRILYGYIRHPTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEE-DLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462
4 -52.9001rfl_A mol:protein length:172 Probable tRNA modification GTPase trmE  ali model follow..  30  1..................................................................................................................................................................................................................GSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFAKLPITVVRNKADITGEALIRLSARTGEGVDVLRNHLKQSM................................................................................ 167
5 -52.8002gj8_A mol:protein length:172 tRNA modification GTPase trmE  ali model follow..  30  2......................................................................................................................................................................................................................SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFAKLPITVVRNKADITGEALIRLSARTGEGVDVLRNHLKQSM................................................................................ 164
6 -40.3002dyk_A mol:protein length:161 GTP-binding protein  ali model follow..  25  3..........................................................................................................................................................................................................................KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS-GDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLKGKPVILVATKVDDPKHELIPTSSEHARGLEELLEAIWERL................................................................................ 160
7 -31.0005lad_A mol:protein length:404 Putative GTP-binding protein  ali model follow..  23  12...........................................................................................................................................................................................................................IVVAGRRNVGKSSFMNALVGQNVSIVSEYAGTTTDPVYKSMELYPVPVTLVDTPGLDDVGE-LGRLRVEKARRVFYRADCGILVTDSEPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKALLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILV.......................................................... 191
8 -29.5005kh0_A mol:protein length:396 Small GTP-binding protein  ali model follow..  26  11...........................................................................................................................................................................................................................IAITGRRNVGKSSFMNALIGQEVSIVSNVAGTTTDPVFKSMELSPVPITLIDTPGLDDVGE-LGIKRIKKAKKSLYRADCGILIVDDIPGNFEEQIIKLFKELEIPYFIAINKIDTIDHENLKVSALKKIGFEKIGKTINSILPKDDEIPYLSDLIDGGDLVILVVPIDLGAPKG................................................ 197
9 -29.2003qq5_A mol:protein length:423 Small GTP-binding protein  ali model follow..  22  31...........................................................................................................................................................................................................................IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIPVTLVDTPGLDDVGE-LGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKALLVSALQKKGFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGR............................................... 221
10 -28.6004dcs_A mol:protein length:456 GTP-BINDING PROTEIN ENGA  ali model follow..  16  1........................................................................................................................................................................................................MGSSSSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILTKKPVVLAVNKLDNTEMRAYPISGTHGLGLGDLLDAVAEHFKNIPETKYNE...................................................................... 187
11 -28.4003j8g_X mol:protein length:490 GTPase Der  ali model follow..  14  5..................VALVGRPNVGKSTLFNRLTRTRDAL---------VADFPGLTRDRKYGRAEIEGREFICIDT------GGIDGTEDGVETRMAEQSLLA----------------IEEADVVLFMVDARA------GLMPADEAIAKHLRSREKPTFLVANKTDGSLGLGE--IAASHGRGVLSLLEHVLLPWMEDLAPQEEVDE-SLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKITDAVEKFSVIKTLQAIEDANVVMLVIDAREGISDQDLSLLGFISGRSLVIVVNKWDGLSQEVHFISALHGSGVGNLFESVREAYDSSTRRVGTSML.................................................................... 384
12 -28.3005dn8_A mol:protein length:446 GTPase Der  ali model follow..  18  8..................IAIVGRPNVGKSTLFNYLTKSRAAL---------VADVPGVTRDRQYGETTIDSQRLLLVDT---------------------GGLVDTENKEVAPLAETQVEQAIDESDCILFLVDAKA------GLVPADEIIAERLRKKGKKIFLAVN----KADRARAAVVQSDFYKL-RGVKDLMTQVLENLPEEKEVIEKEVGIKIAMIGRPNVGKSTLINRLLGEERVIVYDQPGTTRDSIYIPFARNDENYTLIDTAGIRKIQDYVEKFSMIKSLQAMHAADVVIFLLDARQGVTEQDLRLLNRIAGVSLIIAVNKWDGLNIEEYFISALHGTGVGKLFRAIQESYQSIQQELTTGQL.................................................................... 360
13 -27.9002cxx_A mol:protein length:190 Probable GTP-binding protein engB  ali model follow..  22  3..........................................................................................................................................................................................................................TIIFAGRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKIIE----IEWKNHKIIDMPGFKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEDVEFYQFLRELDIPTIVAVNKLDKIKNVQIPISAKFGDNIERLKNRIFEVIRE.............................................................................. 184
14 -26.4001mky_A mol:protein length:439 Probable GTP-binding protein engA  ali model follow..  19  4..................VLIVGRPNVGKSTLFNKLVKKKKAI---------VEDEEGVTRDPVQDTVEWYGKTFKLVDT---------------------CGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR------GITKEDESLADFLRKSTVDTILVANKAENLREFEREPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRREPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRASVVVFNKWDLVVHREIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAI.................................................................... 365
15 -25.8001wf3_A mol:protein length:301 GTP-binding protein  ali model follow..  18  10...........................................................................................................................................................................................................................VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPGKVPILLVGNKLDAAKYPELSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVER------KAIVIGE 248
16 -23.4001ega_A mol:protein length:301 PROTEIN (GTP-BINDING PROTEIN ERA)  ali model follow..  26  11...........................................................................................................................................................................................................................IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREKAPVILAVNKVDNVQEKAVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKL................................................... 202
17 -23.3003iev_A mol:protein length:308 GTP-binding protein era  ali model follow..  23  2.....................................................................................................................................................................................................................MKVGY-VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNAQIIFLDTPGIYEPKDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFLNKPVIVVINKIDKIGPAKNVISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDR------KPIIIGK 252
18 -22.3002qu8_A mol:protein length:228 Putative nucleolar GTP-binding protein 1  ali model follow..  15  25..........................................................................................................................................................................................................................TIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHNGVILFIIDISEQCGLTIKEQINLFYNKSIVIGFNKIDKCNMDSSSFSTLTGVGVEQAKITACELLKN.............................................................................. 199
19 -21.0004aur_A mol:protein length:577 LEOA  ali model follow..  18  5..........................................................................................................................................................KQFSIEKQAAINSLLQLRGMLE---------MLGEMGINISDDLQKVTSAINAIESDV-----LRIALLGAFSDGKTSVIAAWLGKVMDDMNISMDESSDRLSIYKPEGPDQCEIVDTPGLFGDKEREVDGRLVMTRRYISEAHLIFYVVDATNPLKESHSDIVKWVKLSSTIFVINKMDEVTS........................................................................................................ 184
20 -20.8002wjg_A mol:protein length:188 FERROUS IRON TRANSPORT PROTEIN B HOMOLOG  ali model follow..  26  1..................................................................................................................................................................................................................GGSHMKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSKVVPLSAAKKMGIEELKKAISIAVKD.............................................................................. 169
21 -20.5003a1s_A mol:protein length:258 Iron(II) transport protein B  ali model follow..  21  6.........................................................................................................................................................................................................................VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKPVVFTSSVTGEGLEELKEKIVEYAQKNTILHR-----MILDYGEKVESEIKKVENFLRDKKLRINPRYFALKYLSGDPEFYSEGVKLGLPELSEEE........ 232
22 -20.4003jct_b mol:protein length:647 Nucleolar GTP-binding protein 1  ali model follow..  14  105.........................................................................................................................VEQVARDYVRLLKFGQSLFQCKQLKRAALGRMATIVKKLRDPLAYLEQVRQHIGRLPSIDPNTRT---------------------------------LLICGYPNVGKSSFLRCITKS-DVDVQPYAFTTKSLYVGHFDYKYLRFQAIDTPGIDRPTEEMNNIEMQSIYAIAHLRSCVLYFMDLSEQCGFTIEAQVKLFHNKSVMVVINKTDIIRPEDLDSSCQLEENVMEVRNKACEKLLA.............................................................................. 341
23 -20.1002e87_A mol:protein length:357 Hypothetical protein PH1320  ali model follow..  18  104........................................................................................................................IIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPT---------------------------------VVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYGNLIIYIFDPSEHCGFPLEEQIHLFEDLPFLVVINKIDVADEENIKISALKGTGIDLVKEEIIKTLRPLAEKVARE...................................................................... 344
24 -19.9003w5i_A mol:protein length:204 Ferrous iron transport protein B  ali model follow..  19  4.........................................................................................................................................................................................................................KRIALLGMPNTGKSTLFNRMTGGAAR-VGNWPGITVELLSGKILLGADMVEIIDLPGIYDLHGFSDDEQVVRHFLHDNVPDLALVILNATQIERQMSLLLQLKQLNMNIVVLLNMSDEAKQPVFQLSGKYGTGYQEALQAVTRALRYPTPGMAENV--TQLEQDEHIEAEMVRILKSAVQIPARLP....................................... 203
25 -19.0003pqc_A mol:protein length:195 Probable GTP-binding protein engB  ali model follow..  28  25..........................................................................................................................................................................................................................EVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI---NFYLVNSKYYFVDLPGYGYAKVSKKER-VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLPFTIVLTKMDKVKMSEIPTSSVTGEGISELLDLISTLLKEN............................................................................. 195
26 -19.0003k53_A mol:protein length:271 Ferrous iron transport protein b  ali model follow..  21  4.........................................................................................................................................................................................................................KTVALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLLFEMEVKNIILVLNKFDLLKKPVIPTNAKKGEGVEELKRMIALMAEGKVTTNP-----IIPRYDEDIEREIKHISELLRGLAEKYPIRWLALKLLQRDEEVIKLVLKYLGQEKMDEI........ 233
27 -18.4003b1v_A mol:protein length:272 Ferrous iron uptake transporter protein B  ali model follow..  18  4.........................................................................................................................................................................................................................TEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVK-KNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGPVVATSALKQTGVDQVVKKAAHTTTSTVGDL------AFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSLVEAEL.................... 216
28 -18.4002qtf_A mol:protein length:364 GTP-binding protein  ali model follow..  16  26..........................................................KVTSIYKLPKSPNVKFYIQYDKLQ--------IKNDEEISTLIIFEQLKPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIEL-ARLKYELPIIKETYTKSKIGEQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNK--SIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSVSGKPILVTLNKIDKINGDLIPISALKRTNLELLRDKIYQLATQ.............................................................................. 354
29 -18.4005ucv_A mol:protein length:217 Probable GTP-binding protein EngB  ali model follow..  16  3..................................................................................................................................................................................................MNLFQNAKFFTTVNHLKDLPDTPLEIAFVGRSNAGKSSAINTLTNHVRAYVSKTPGRTQHINFFELQ----GNFMVDLPGYGYAQVPEAVR-LGDYLRHRKQLIGLVLIMDARHPLKELDIRMLDFFHTTPVHILLSKAD----------KLSKNEQIKTLSQVKKLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWFDAADAAAS....................................... 206
30 -18.2002wia_A mol:protein length:267 FERROUS IRON TRANSPORT PROTEIN B  ali model follow..  17  4.........................................................................................................................................................................................................................LTVGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSSSQTSLDEQIACHYILSGDADMLINVVDASNLERNLYLTLQLLELGIPCVVALNMLDIAEKPVIPLVSTRGRGIEALKIALDRHQANSDL--------ELVHYPQPLLREADLLAQQMSAQIPPRQRRWLGLQMLEGDIYSRAYAGDAADK.............. 225
31 -18.2003iby_A mol:protein length:256 Ferrous iron transport protein B  ali model follow..  25  2.........................................................................................................................................................................................................................THALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHSVIPIQAHKNIGIPALQQSLLHCSQK.............................................................................. 167
32 -18.1003i8s_A mol:protein length:274 Ferrous iron transport protein B  ali model follow..  17  4.........................................................................................................................................................................................................................LTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSSSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKPVIPLVSTRGRGIEALKLAIDRYKANENV--------ELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQH.............. 225
33 -18.0004dhe_A mol:protein length:223 Probable GTP-binding protein EngB  ali model follow..  18  31..........................................................................................................................................................................................................................EIAFAGRSNAGKSTAINVLCNQKRAFASKTPGRTQHINYFSVG-AEPVAHLVDLPGYGYAEVPGAAK-LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTPIHSLLTKCDKLTRQEQLFSALKRTGLDDAHALIESWLRPAAADEDHA...................................................................... 219
34 -17.9001sul_A mol:protein length:195 GTP-binding protein YsxC  ali model follow..  23  25..........................................................................................................................................................................................................................EIALAGRSNVGKSSFINSLINRKNARTSSKPGKTQTLNFYIIN----ELHFVDVPGYGFAKVSKSER-IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYPVIVIATKADKIPKGKILFSSETKKGKDEAWGAIKKMINR.............................................................................. 195
35 -17.6003cnl_A mol:protein length:262 Putative uncharacterized protein  ali model follow..  16  5............................................................................................................PGHI-EKAKRQIKDLLRLVNTVVEVRDARAPFATS----------AYGVDFSRKETIILLNKVDIA---DEKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENG---VKILDTPGILYKNIFSEDLAAKLLLVGSLPVERI.............................................................................................................................................. 179
36 -17.5001pui_A mol:protein length:210 Probable GTP-binding protein engB  ali model follow..  23  28..........................................................................................................................................................................................................................EVAFAGRSNAGKSSALNTLTNQKSARTSKTPGRTQLINLFEVA----GKRLVDLPGYGYAEVPEEMK-LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSAVLVLLTKADKLASGAETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQ...................................................................... 207
37 -17.4001puj_A mol:protein length:282 conserved hypothetical protein ylqF  ali model follow..  17  7............................................................................................................PGHM-AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG----ELELLDTPGILWPKFEDELVGLRLAVTGAIKDSII.............................................................................................................................................. 200
38 -17.4004r98_A mol:protein length:271 Ferrous iron transport protein B  ali model follow..  16  4.........................................................................................................................................................................................................................LTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSSSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKPVIPLVATDTKNVQFVLKLAIDRYKANENV-------ELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQH.............. 226
39 -17.0005ady_6 mol:protein length:426 GTPASE HFLX  ali model follow..  15  9.............................................................EQAVLVHIYFTQDKDMEDLQEFSSAGVEALQVITGSRKAPHPKYFVGEGKAVE-VLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVR-PGETQLETDRRLLRNRIVQIQSRLERVEKQREQGRQSRI--TVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNTVHEIPTLLVMNKIDMLEDFEVWLSAQTGAGIPQLFQALTERLSG.............................................................................. 363
40 -16.5006D71 Entity 1(prereleased)  ali follow..  18  1.....................................................................................................................................................................................................................MKKDVRILLVGEPRVGKTSLIMSLVSEE--FPEEVPPRAEETIPADVTPERVPTHIVDYSEAEQSDEQLHQ--------EISQANVICIVYAVNNKHSIDKVTSRDKDSRLPLILVGNKSDLVEYSSVECSAKNLKNISELFYYAQKAV................................................................................ 166
41 -16.4004a9a_A mol:protein length:376 RIBOSOME-INTERACTING GTPASE 1  ali model follow..  16  1.........................................................................................................................MMSTTVEKIKAIEDEMARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVA------------------------------RTGVASVGFVGFPSVGKSTLLSKLTGTESE-AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRG-KQVIAVARTCNLLFIILDVNKPLHHKQIIEKERLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSE.................................................................................. 213
42 -16.1005gnr_A mol:protein length:421 Mitofusin-1  ali model follow..  11  15.........................................................................................................................................................KKAITAIFDQLLEFVTEGSHFVE--NPELDRIATEDDLVEMQGYKDKLSIIGE-----VLSRRHMKVAFFGRTSSGASSVINAMLWDKVLPSGIGHITN--WPKAKCALLRDDLVLVDSPGTDVTTELDSW-----IDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVNALEAQNRIFFVSAKEVLSARKQKAQGMPESGVALAEGFHARLQEFQNFEQIFEECISQSAVKTKFEQHTIR..... 343
43 -15.7003bb1_A mol:protein length:274 Translocase of chloroplast 34  ali model follow..  15  38.......................................................................................................................................................................................................................NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMA-IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRS.................................................................................. 191
44 -15.7005go4_A mol:protein length:433 Mitofusin-1  ali model follow..  11  3......................................................................................................................................HMGGSMAEPVSPLKHFVLAKKAITAIFDQLLEFVTEGSHFVE--NPELDRIATEDDLVEMQGYKDKLSIIGE-----VLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHITN--WPKAKCALLRDDLVLVDSPGTDVTTELDSW-----IDKFCLDADVFVLVANSESTLMNTEKHFFHKVNEPNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVNALEAQNRIFFVSAKEVLSARKQKAQGMPESGVALAEGFHARLQEFQNFEQIFEECISQSAVKTKFEQ......... 346
45 -15.6001h65_A mol:protein length:270 CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34  ali model follow..  15  38.......................................................................................................................................................................................................................NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMA-IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRS.................................................................................. 191
46 -15.5003bb3_A mol:protein length:262 T7I23.11 protein  ali model follow..  12  35.......................................................................................................................................................................................................................NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQA-IKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEA----------IPNLVKAITDVATNQRKAIHVDAAALE..... 256
47 -15.1005goe_A mol:protein length:422 Mitofusin-1  ali model follow..  11  1......................................................................................................................................GPHMGGSMAEPVSPLK-LAKKAITAIFDQLLEFVTEGSHFVE--NPELDRIATEDDLVEMQGYKDKLSIIGE-----VLSRRHMKVAFFGRTSSGKSSVINAMLWDKVLPSGIGHITN--WPKAKCALLRDDLVLVDSPGTDVTTELDSW-----IDKFCLDADVFVLVANSESTLMNTEKHFFHKVNERNIFILNNRWDASASEPEYMEDVRRQHMERCLHFLVEELKVVNALEAQNRIFFVSAKEVLSARKQKAQGMPESGVALAEGFHARLQEFQNFEQIFEECISQSAVKTKFEQHTIR..... 350
48 -14.4004lv5_B mol:protein length:423 Interferon-inducible GTPase 1  ali model follow..  12  2............................................................................................................................SPGIPGSTTMGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKII----------SQEILNLIELRMRKGNIQLTNSAISDALKEIDSSV-----LNVAVTGETGSGKSSFINTLRGEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPNTY---LEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNELSNKNVCHYDFPVLMDKLISD-------------LPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLD-KSMKFYRTVFGV.. 332
49 -14.2001tpz_A mol:protein length:422 interferon-inducible GTPase  ali model follow..  12  1.....................................................................................................................................MGQLFSSPKSDENNDLPSSFTGYFKKFNTGRKII----------SQEILNLIELRMRKGNIQLTNSAISDALKEIDSSV-----LNVAVTGETGSGKSSFINTLRGIGNAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDT---YLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNELSNKNVCHYDFPVLMDKLISD-------------LPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLD-KSMKFYRTVFGVDE 324
50 -14.1005ksy_A mol:protein length:192 Mitochondrial Rho GTPase 1  ali model follow..  23  2................................................................................................................................................................................................................GKKQTQRNVFRCNVIGVKNCGKSGVLQALLGRNLMRQKKIREDHKSY---------YAINTVYVYGQEKYLLLHDISESEFLTEAEIICDVVCLVYDVSNPKSFEYCARIFKQSRIPCLIVAAKSDLHEVKQEYSISPT............................................................................................... 135
51 -14.1003llu_A mol:protein length:196 Ras-related GTP-binding protein C  ali model follow..  14  12......................................................................................................................................................................................................................GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSVNFQIWDFPGQMDFFDP-------DYEMIFRGTGALIYVIDAQDDYMEALSKAYKVNPDMNFEVFIHKVDGLSDDH------KIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKL............................................... 189
52 -14.0005owv_C mol:protein length:614 GTP-binding protein  ali model follow..  17  3...........................................................................................................................................................................HMQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNE-FSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFEDGSDIITNIEKLAITLVDTPGLNANENDTLT-----TLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLEENSICVLNQKDKLSAEELDNV------LNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTTVLKEKFVKRKILNLCEILED......................... 299
53 -13.9002cjw_A mol:protein length:192 GTP-BINDING PROTEIN GEM  ali model follow..  16  7.........................................................................................................................................................................................................................YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGATIILLDMWENKGENEWLHD-------HCMQVGDAYLIVYSITDRAS-IQLRRARQTEDIPIILVGNKSDLVRCREVETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRK............................................................ 190
54 -13.7002j68_A mol:protein length:695 BACTERIAL DYNAMIN-LIKE PROTEIN  ali model follow..  11  2.........................................................................................................................................VNQVATDRFIQDLERVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQ------------GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTA-QNFKYKYTIDPAEIEIVDSPGLNDTEARNEL-----SLGYVNNCHAILFVMRASQPCTLGERRYLENYRGLTVFFLVNAWDQVRESL--IDPDDVEELQASENRLRQVFNANLAELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRERAIAELRQVRTLARLACNHTRE............... 348
55 -13.6002g3y_A mol:protein length:211 GTP-binding protein GEM  ali model follow..  18  32.........................................................................................................................................................................................................................YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGILLDMWENKG--------ENEWLHDHCMQVGDAYLIVYSITDRASFEKIQLRRARQTEDIPIILVGNKSDLVRCREVETSAAVQHNVKELFEGIVRQVRLRRDSKEKN...................................................................... 205
56 -13.5002q3f_A mol:protein length:181 Ras-related GTP-binding protein D  ali model follow..  12  2......................................................................................................................................................................................................................EVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSVNFQIWDFPGQIDFFDPTFD-----YEMIFRGTGALIFVIDSQDDYMEALTRAYKVNTDINFEVFIHKVDGLSDDHKIETQ------RDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKL............................................... 179
57 -13.1002erx_A mol:protein length:172 GTP-binding protein Di-Ras2  ali model follow..  16  4.........................................................................................................................................................................................................................YRVAVFGAGGVGKSSLVLRFV--KGTFRESYIPTVEDTYRQVISCDKCTLQITDTTGSHQFPAMQRL--------SISKGHAFILVYSITSRQSEQICEIKGDVESIPIMLVGNKCDESPSREVETSAKLNHNVKELFQELLNLEKR.............................................................................. 167
58 -13.0003jct_m mol:protein length:486 Nucleolar GTP-binding protein 2  ali model follow..  14  219...........................................................................................................................IDSSDVVIHVLDARDPLGTRCK------SVEEYMKKETPHKHLIYVLNKC--DLVPTWVAAAWVKHLSKERPTLKGSLIQLLRQFSQLHTDRKQISVGFIGYPNTGKSSIINTLRKKKVCQVAPIPGETKVWQYITLMKR---IFLIDCPGIKDSEEDILFRGVVRVEHVTHPEQYIPGVLK......................................................................................................................................... 405
59 -13.0002nzj_A mol:protein length:175 GTP-binding protein REM 1  ali model follow..  17  5.........................................................................................................................................................................................................................YRVVLLGDPGVGKTSLASLFAGKQ--ERDLHEQLGEDVYERTLTVDGTTLVVVDTWE----AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESIQLRRTHQADHVPIILVGNKADLARCREVETSATLQHNVAELFEGVVRQL................................................................................ 167
60 -13.0003q85_A mol:protein length:169 GTP-binding protein REM 2  ali model follow..  16  3.........................................................................................................................................................................................................................FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKVTLIVYDIWEQGDAGGWLQD-------HCLQTGDAFLIVFSVTDRRS-LRLRAGRPHHDLPVILVGNKSDLARSREVSTSAALHHNTRELFEGAVRQI................................................................................ 165
61 -13.0004aii_A mol:protein length:180 GTP-BINDING PROTEIN REM 2  ali model follow..  16  7.........................................................................................................................................................................................................................FKVMLLGESGVGKSTLAGTFGGLQGDNAHEME-NSEDTYERRIMVDKVTLIVYDIWEQGDAGGWLQD-------HCLQTGDAFLIVFSVTDRRS-LRLRAGRPHHDLPVILVGNKSDLARSREVETSAALHHNTRELFEGAVRQI................................................................................ 169
62 -12.9003cbq_A mol:protein length:195 GTP-binding protein REM 2  ali model follow..  16  18.........................................................................................................................................................................................................................FKVMLVGESGVGKSTLAGTFGGLQ--DSAHEPENPEDTYERRIMVDKVTLVVYDIWEQGDAGGWLRD-------HCLQTGDAFLIVFSVTDRRS-LRLRAGRPHHDLPVILVGNKSDLARSREVETSAALHHNTRELFEGAVRQI................................................................................ 180
63 -12.8002gf0_A mol:protein length:199 GTP-binding protein Di-Ras1  ali model follow..  16  9.........................................................................................................................................................................................................................YRVVVFGAGGVGKSSLVLRFV--KGTFRDTYIPTIEDTYRQVISCDKCTLQITDTTGSHQFPAMQRL--------SISKGHAFILVFSVTSKQSKLIVQIKGSVEDIPVMLVGNKCDETQREVMETSAKMNYNVKELFQELLTLETR.............................................................................. 171
64 -12.7003c5c_A mol:protein length:187 RAS-like protein 12  ali model follow..  15  16.........................................................................................................................................................................................................................VNLAILGRRGAGKSALTVKFL--TKRFISEYDPNLEDTYSSEETVDHVHLRVMDTAD---------LDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELRSIPALLLGNKLDMAQYRQV..................................................................................................... 139
65 -12.6002dpx_A mol:protein length:174 GTP-binding protein RAD  ali model follow..  12  8.........................................................................................................................................................................................................................YKVLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGASLMVYDIWEQDGGRWLPG--------HCMAMGDAYVIVYSVTDKGS-VQLRRARQTDDVPIILVGNKSDLVRSREVETSAALHHNVQALFEGVVRQI................................................................................ 167
66 -12.6005uqw_A mol:protein length:189 GTPase KRas  ali model follow..  17  18.........................................................................................................................................................................................................................YKLVVVGAVGVGKSALTIQLI--QNHFVDEYDPTIEDSYRKQVVIDGCLLDILDTAGQEEYSAMRDQ--------YMRTGEGFLCVFAINNTKS-EQIKRVKDSEDVPMVLVGNKCDLPSRTVIETSAKTRQGVDDAFYTLVREIRK.............................................................................. 179
67 -12.6002msc_B mol:protein length:187 V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog, isoform CRA_b  ali model follow..  16  6.........................................................................................................................................................................................................................YKLVVVGAGGVGKSALTIQLI--QNHFVDEYDPTIEDSYRKQVVIDGCLLDILDTAGQEEYSAMRDQ--------YMRTGEGFLCVFAINNTKS-EQIKRVKDSEDVPMVLVGNKCDLPSRTVIETSAKTRQGVDDAFYTLVREIRKHKEKMSKD...................................................................... 175
68 -12.6002gjs_A mol:protein length:176 GTP-binding protein RAD  ali model follow..  12  8.........................................................................................................................................................................................................................YKVLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGASLMVYDIWEQDGGRWLPG--------HCMAMGDAYVIVYSVTDKGS-VQLRRARQTDDVPIILVGNKSDLVRSREVETSAALHHNVQALFEGVVRQI................................................................................ 167
69 -12.6002ged_A mol:protein length:193 Signal recognition particle receptor beta subunit  ali model follow..  19  46......................................................................................................................................................................................................................SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-----SAADYDGSGVTLVDFPG----HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTASSCENGIDILIACNKSELFTARPPSKIKDAESEIQKVIER..................................................................................... 191
70 -12.6003t12_A mol:protein length:198 Gliding protein mglA  ali model follow..  13  15.........................................................................................................................................................................................................................FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASLRGVDGIVFVADSAPNRLRANAESMRNMDDVPIVIQVNKRDLPDAPVLEAVATEGKGVFETLKEVSRLVLARVAGGS........................................................................ 198
71 -12.5006axg_B mol:protein length:170 GTPase HRas  ali model follow..  17  8.........................................................................................................................................................................................................................YKLVVVGAGGVGKSALTIQLI--QNHFVDEYDPTIEDSYRKQVVIDGCLLDILDTAGQEEYSAMRDQ--------YMRTGEGFLCVFAINNTKS-EQIKRVKDSDDVPMVLVGNKCDLAARTVIETSAKTRQGVEDAFYTLVREIRQ.............................................................................. 169
72 -12.5005owv_A mol:protein length:732 GTP-binding protein  ali model follow..  19  71........................................................................................................................NAQICILNLFKSGFISKQDLLKALKILEKISKNTEIFDFILQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQNLE-----FNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETAEDFIKDKPLIQNIAISIVDTPGLDDVVVQREIV----TNEYLRESDFLIHLMNASQSLTQKDADFLVHCRLSKFLIVLTKADLLSKKDLEEVSLQKSGMQEFENYLFNEL------------YAGEKSKIALRAYKKELHLELKNILSEYEMQNRLIK................................ 469
73 -12.5003con_A mol:protein length:190 GTPase NRas  ali model follow..  17  16.........................................................................................................................................................................................................................YKLVVVGAGGVGKSALTIQLI--QNHFVDEYDPTIEDSYRKQVVIDGCLLDILDTAGQEEYSAMRDQ--------YMRTGEGFLCVFAINNSKS-EQIKRVKDSDDVPMVLVGNKCDLPTRTVIETSAKTRQGVEDAFYTLVREIRQYRMKKLN....................................................................... 184
74 -12.5003gft_A mol:protein length:187 GTPase KRas  ali model follow..  17  16.........................................................................................................................................................................................................................YKLVVVGAGGVGKSALTIQLI--QNHFVDEYDPTIEDSYRKQVVIDGCLLDILDTAGHEEYSAMRDQ--------YMRTGEGFLCVFAINNTKS-EQIKRVKDSEDVPMVLVGNKCDLPSRTVIETSAKTRQGVDDAFYTLVREIRK.............................................................................. 177
75 -12.5005vbe_A mol:protein length:171 GTPase HRas  ali model follow..  17  9.........................................................................................................................................................................................................................YKLVVVGAGGVGKSALTIQLI--QNHFVDEYDPTIEDSYRKQVVIDGCLLDILDTAGQEEYSAMRDQ--------YCRTGEGFLCVFAINNTKS-EQIKRVKDSDDVPMVLVGNKCDLAARTVIETSAKTRQGVEDAFYTLVREIRQ.............................................................................. 170

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.