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Query: gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit MPN001 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAENIDVLEEGEVIVKGKIFSELINGIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKEFPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFNGSNGKQIFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLSTELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERFFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEIELYFQGSNKYFLISSNNEPELKEILVPSKLast
1 -4.480PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  10  57..VDVSFSNASSAATKVNSAWKHYK--------LTVTGDDFSWTYQPESNEPIVDGEAAAKEIISHNEAFVWPVRLVESL-----SGKTKTTATSNEVDLDQDVDLSML-----------------------SDTFDQKKFEKDLGAAIDEFNE-GRSGTFEANSSYDEQAGKFTVEKARSNEKLNREHVELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGK--VDGS--SVLQWISFADPANPTLDTSQISSWAAELA--GFNTVGSTRWWTRADGKQCAVEGGDF--------------GWSIDSSSLAKQVEDAINNKQTGEIEIKYSQK...................... 362
2 -1.920PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  21...MFEIDNYEEPSETIWGEVVDEATGKRVLT----DQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQN---------TKIFKGEYNVRIDGPFIPLHDGSVNTEISGTTKVKFEVQPFLNVEFVGNPQQVRVTRGVSDEVFREKIQPMGNWKDEYLNVTDIQFFVSYSNTV............................................................................................................................................................................................................. 197
3 -1.830PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  10......................................................................................................................................................................................................................................................................GLGIAVCLFSATNSIAQVKTHSSLRAEN--------LEVILVKDIQHISDTTHHTHAHDPHKSSYKILHVNFMLV---SDPSVTGYKSVMMRLIDPHGVDIYDPAAGGGLF....... 110
4 -1.730PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  13  3..................................................RFASHFLFLPAYGYLKQYAVETEEGSVVRIF-PLTEEIENVEWLPGAIVLLTQDELKELD-----NSPLVNAPQNYSKTSAEFYYNSTRILVKFPQNLLMALPPSIEGRCQLLPVYFSNFDITTMLPAAGTRHRL................................................................................................................................................................................................... 132
5 -1.210PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  10  59...............................................................................................................................................................................................................................YVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTF-----TSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAVVLSGNELTLLFNADKLLKFLSTVSS................................ 179
6 -1.190HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  15  57...................................................................................................................................................................................................................................................................................................................................GFAGDSTSIFINDSLLVNRTMTEEPFILEVKRFAEQSALMIVNNATEKLSLFELSEQ 113
7 -1.190PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  11  62.....................................................................................................................................................................................................QAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMVQIA--------VQGSASNVQVKQENNGNVYLSMSVQGIFISATVNLVLYSGTNNAMVTVDPNFSGNNLTMN----GTLLPYSDSNVFQGT.................................................... 195
8 -1.180PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  12  1.....................................................................................................................................................................................................................................................................................SVLDGFEAVGEKTTTNKMTMTVMESSVRFSKGVTEA------------CPAYVKLLVNDKQKKIAVQACDAXD.............................. 63
9 -1.160PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  11  210LTITFAYNSTFLNLAQIVRINTIRPNPNP--PNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINK--------SVKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEKFFKD------DVEVFSPKIPALYFVVNNSTKNIFSSVGISSLSTNNPKLIFTFT........................................................................................................................................................................................................ 375
10 -1.070PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  2..........................................................................................................................................SNIEQAYRGYGFAGRGQKNGCTVYQ-LKGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFL----QIDYCIEGCYEVEYQNGTVSFLGEGDLCVTDLSRQVFVSSRLPLRKYRGV-------TLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYWIKTMEL......................................... 190

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.