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Query: gi|13507743|ref|NP_109692.1| DNA gyrase subunit A MPN004 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKQQDQIDKIRQELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVSIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKIDKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQCEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTGPVVTTTTVFGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTTATETDDVGSKQITQLast
1 -1.880HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  13  3......................EYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPR-----ILRCSRIENIILIENVMICGVVAGNI-----SSVLDTAYNLGFANMPKVPVSNICGNYGLCVGIFVGCIAVALAEILHTFPIIYKRMK-------------------LRAGLGIIVISMAIGKALG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 145
2 -1.810HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  12................GESVGSLYWEKESNAALFDYERKFIRSGL------DISPIIMPISQYRNTPYRFLENRTDCFKGLPG-LFADSLP--DTFGNQIINEWFASKGLSGEEITPLDRLCYVGKRGMGALEFEPSSPINGMNE-IEELTELAKSVFTDRMAFQVQLRQEGRNILDILKVGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 173
3 -1.700PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  15  26......................VSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLF--KVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTSIVQAYLFMYQGFSSDLMMLMGN------------LMQW-KFRMPAIFKKALRSMTEKTVHDVCT-KTVWKADDVHKTAAAVRQYKERLGFSEQWMSEY-------VYNIVLLAKKEPKHKDEE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 208
4 -1.690HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  13  1.............................................................................................................................................................................................MAVSAPP---------ILKTLKTKDMIAKTILQQIGGKRF-TGSFIDMGNGLRMSLARNKTSA--RLDIIYDEGADLYNMRFYRRTFSKKTFECKTKDIAVHEGIYFDMLEEMFTMV--TGLYTRF............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 118
5 -1.660PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  15  8..............................ITITHHKILVLYKQGL--LHDMSK-PTEFLVGCRYYKGYMSPNNAERADRGYSSAWNKHHLETKMEGMKMVCEMFIDR------VSASKNYQKEKYTDKSALEYTKAMLEYLLVMLSVKGEEYTYSYIKKEVLKGHIP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 185
6 -1.570PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  12  1.................................................................................................................LIAPDGSVGR-------SIAYRCGAFQLLAQMALRRELPEG-------------------------------VAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRI---------GLAGHQPGLGEVYITGSLYLCTTAFLPLGLPASDDFWSQPDAPWTSARV.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 125
7 -1.410PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  12  104...........................................................................NQLKDILETIIG-----EDVSI---VVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKN-------------GDKETPVVVQTKKPD--IRGVLVVAQGVDNVQIKKTIIEAVTRVLDV...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 215
8 -1.360PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  14  3.......................................IDKGGPEAHFKRYIKEVKGKKTGLFITLGADPAGEHKVGRELLNEILAEFICQGDPKVIEEMKEMTPERQATWKQASTHPD----ENDLKNARKAFEG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 120
9 -1.230PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  17  185........................TFKEIKFKKINFFSSIFLS-----------------IFAL-TITFAYNSTFLNLAQIV---INTIRPNPNPNPNEIF-----NFDLNNLPIEN----GLLTVE---AIWFLQSKME---------TDTATV----------------------IIINNTA---VNINKNSVKHN-----NFAVNYLKSEENN------YLTGRDFPLLGLFVEK------------------KDDVEVFSPK----IPALYFVVNNST--KNIFSSV------GISSLSTNNPKLIFTFTFD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 377
10 -1.110PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  1............................MKIERLFIYCLLAGTSLL-TLSEGMYPL--TFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDG-GEVI-----VKIGTDGAVGSYTLDSDGKPTTSTSNIPA---YWQ--------------STASQTVYGWYPNTADISLTGQDNTGNLKGVSSKQYSYKENVQLN-HQLVKFR----VKLNGDVPNLSDAKVFFYG---------------YPTCKNEYGTVIPQGDLATRKVGDYYTAML--APDTKTSNNFVK.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 234

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.