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Query: gi|13507751|ref|NP_109700.1|(removed signal:1-21) hypothetical protein MPN012 [Mycoplasma pneumoniae M129], from M.pneumoniae

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SIQSDLRNLIQETTKQDVDVYKVIKTSEGRKNLITSLKKSYEVNPDKTTKLLLDAWKQSAEKGEIDIEKINFPDVGIYATGNDPLKIELKVEYFDMEYQDLNNFSINAKLNYNFNWHGNYSSNGFAAKKGDKHVFDLPLAIKPSSKNQSKTISFITKTGEGVDTEWIEFPVSLSWSLQGKINKVKEILRKSFWKAMILEQILNTQLISLDTCFSLast
1 -3.450PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  19  221.................LNLAQIVR--------INTIRPNPNPNPNEIFNFDLN--NLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINKNSVNNFAVNYLKSEENNWY-DFPLLGLFVEKDDVEVFSLYFVVNNSTKNIFSSVGISSLS........................................................ 364
2 -3.390HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  11  27.......................................AFAAGTGDVAGAVESTWSTASTQIKSVVDNVVFPAIDLILA----FFAKLGTAYFEYRKSGQFEWAAPAIL........................................................................................................ 95
3 -3.310HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  14  111............................................SASDVTLQLSAASQSVPVGG---------TATIVHEGSGNYLVDGSDSGRVLTITSGQEMAKGDKDVQKVTWNTNANATLAKCTDESG--YVAQLSLKDHPKVKSDPVTFTVQ......................................................... 240
4 -3.150PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  15  2................................LRRSVPKSWRTPPRKRRKWRFTVWRRSATSKPPSGNLPKSGETRKQPTIKNEFINEKRKMRMNLPKVKMLQVSKCLIGLAVMNWESVEGKPDVLIYKEGEAY................................................................................ 123
5 -2.780PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  82................DENLFPLLSIKSNNGRLAIRIQDGTRIKPTQY---------------VIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHLGEFSVSGSGDLVFADLDCKN..................................................................................... 184
6 -2.440PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  13  15.................AVAMINLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTDADGNYCYQELNFYLDR---HGED-----------YIRVEYPNGRYSESVYSFTWNWEDRSQYS-MVYGPGDVSYLD.............................................................................. 122
7 -2.330HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  20  73.........LDKTDPALRRREIFPMTEEGRTAVAQYLNDAYNAEPER--------WSAHPS......................................................................................................................................................... 116
8 -2.280PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  27ELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVG---------APSRPRVTLPEAQELAEARRRGAASLGLSVAI-FAFRGLSETGLVPFNEDTATFLALAVDLPLVALGVIMLLTRSRLFTNVKHLVDLEFTPDPIVTAWAARLRLEHEDRRMRRLAIAVGL................ 222
9 -2.140PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)  ali follow..  20  243SAVSRKAIIIDGQEQLIIRMRDPLTNFEQTVVM-----DALPQRPPKTTKLLIETSFQSETDCHIRVTDMGFGEI........................................................................................................................................... 314
10 -2.140PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  10  15...AEFASVTELYT----DEKGCVSITIGLGDIHIRAVKD-MGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIE------------SYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSN--QDRLALLKTLKVKDDVTASVLEDHL...................... 192

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.