current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430
# Score Template Links and tools%idFirst ALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERVLast
1 -89.600[D] COG0772 Bacterial cell division membrane protein  ali follow..  25  12..................................ALFERFHIDLPLLLGVLALMGFGLVVMYSAS-------GQSLAMMDRQAMRMAMALIIMVILAQI--PPRTYESAAPILFFCGVILLVCVLLF---GEISKGAQRWLDLGFVRFQPSELLKLAVPLMVARYIGKHALP-------------PSFKTLFASLVMVFVPTILIAKQPDLGTSILIAASGIFVIFLAGISWKLITAAAVAIGAFVPVLWLMHEYQKTRVRTLFDPESDPLGAGYHIIQSKIAIGSGGLSGKGWLHGTQSFLPERHTDFIFAVIAEEWGMIGILVLLSLYLFIIGRGLYLASHAQTSFGRMMAGSIVLSFFVYVFVNIGMVSGILPVVGVPLPLISYGGTSMVTLMAGFGILMSIHTHRKAFSKT................... 372
2 -12.000[M] COG3307 Lipid A core - O-antigen ligase and related enzymes  ali follow..  13  19SIAALLLGISMPTNNQLMSVSLVLIIISLIINRKSLDFKPLLTSPLVYLPAAMFVLLALSLLYQNNSYGP-----------DMVGKYKKLLYILPLALFFMNQPRLIKLFCTGFLVANAVILAGSLAVGVLHIPLSGVDPTNPTIFKLQITQNFFMALAALLWLVLAFQHQG--------------WKRWGYSVLVVAASYSILFLVLG---TGYVALIVGLGVWLFFSLGNRQRLTLVVLGALAFAALIFIPNKATDRIVQGVD--ACNSSMGQRSAEAARLIKESPILGHGAGGFYYENVNNPHNQYLLETI--QSGVIG----LFLFLAWVICCYRVIWQQTPALRNVLLAVLTSYM----------------ACNFFNSFLLDSSEGHLF-MIFVAVLAGYSVSGSQSIAGKRLPT.............. 410
3 -8.990[P] KOG4505 Na+/H+ antiporter  ali follow..  4..........SQVEISKPHLAYAIIGGFTSLFMLCSLIIK--EKLFLGEATMATATGLIFGPYVAKLFVPTSWGNTDYITEELARVLLVVEVFAAGAELPRAY-MLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPRLSFLAIAAC-ITATDPVLASSIVGKGKFARRVPGHLRN----------------------------MLLAESGCNDGMAIPFLYLAIYLIIEKPRDWVCIIILYECTFGCVLGAIIGVIARKMIKFSERRGLMDRESFLVFYFVLAIGVDDLLVSGAAFSWDSW---FSKKTEESHVSNVIDLLLNLSFFVYVGAIMPWPQFHMPHMDLSVWRLVVLAICILI----ARRIPAVLLFKSFVPDIINFAGHFGPIGVGALYTCLVARA.............................. 383
4 -7.140[R] KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)  ali follow..  12  113................TCVTYMGSSIYTPGQEYIQEEFHVGHVVATLNLSLYVLGYGLGPIIFSPLSETARYGRLNLYMVTLFFFMIFCSPSLATGGGTVADIISPEMVPLVLGMWSAGAVAAPVLAPLLGAAMVDAKNWRFIFWLLMWLSAATFILLAFFFPEILYRRALKLRKETYTEQDKLDREVDARTFLINTLYRPLKMIIKEPAILAFDLYIAVAYGCFYLVEVGLAYMGFCVGCVLAYGLFGILNMRIIVPRFR------NGTFTPEAFLIVAMCVCLPLSLFLFGWTARVHWILP------VISEVFFVLAVFNIFQATFAYLATCYPKYVASVFAGNGFCRASFACAFPLFGRAMYDNLASLVGFLTLGLAIIPFILY-GPSL.......................................... 539
5 -6.750[P] KOG3684 Ca2+-activated K+ channel proteins (intermediate/small conductance classes)  ali follow..  12  273...................................RRAPFEKRKRLSDYALIFGMFGIVMVIETELSWGLYSKDSMFSLALKCLISLSTIILLGLIIAYADDWRIAMTYERILYISLEMLVCAIHPIPGEYKFFWTARLAFSYTPSRAEADVDIILSIPMFLRLYLIAR--VMLLHSKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVLLVFSISLWIIAAWT--------------------------RACERYHDQQDVTSNFLGAMWLISITFLSIGYG------------DMVPHTYCGKGVCLLTGIMGAG----CTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRSVKMEQRKLSDQANTLVDLSKMQNVMYDLI 642
6 -6.440[S] KOG4610 Uncharacterized conserved protein  ali follow..  13  11..............................................................................ILTRIIFSAHSLLAIWQVVALKSD-------IIYWALCGPLLLLLLEGIFTIMIKKTQEWRW-------FCPSVFLYLSSIVPAIWLLELDKVARRVGNMTSTNSTVYSPSNYSIPVGNTTIFITSTNSSGVPPVATLLGQAGVTLSVTPDTWTTLIEQFLMLILI---------------VGRWLLPKGDLTRD--QLSQLLLVY-------IGTAADIIEFFDSYKDD----SIAKIGFLVFLTLGIWSWSLMQFTIVLSATRGRRPRGSGSVWGIVLNVILQ-FLTFRLLI-IFQYKIINYMNVFFTCKNSLVIILQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDA. 342
7 -6.240[S] KOG3472 Predicted small membrane protein  ali follow..  16  77.....................................................................................................................................................................................................................................................................................IVGASAIFMGAYCKYVLKDVSDPKEQVDSQAFA---VANRIHFLHSFAMMAM-----------LAHYPVFTGTLMITGMMLFSGCMYYRALTGEKRLQPYA----TV---GGFCLMAAWLSLVL................................. 181
8 -6.100[AD] KOG2809 Telomerase elongation inhibitor/RNA maturation protein PINX1  ali follow..  15  1.......................................................................................................................................................................................................................................................MSMLAERRRKQKWA--VDP-NDDSKFGQRMLEKM-----GWSKGKGLGA-------------------QEHGAT--------------DHIKVQVKNNH-------LGL----------------------GAT----NNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS 120
9 -6.080[R] KOG2891 Surface glycoprotein  ali follow..  10  8...................................................................................................................................ENVADCIPFYLPHSLYLKP--LAKMQISVSLPTIKSGKSVSNLEIMDKLGAELKP---DKFLLLKVSKSTVNTIRLEAELDERKRLRAAIQRL-----DGISLRISGFSESFRVRCAESKDDFPTRHDWDSYFRDARNMDEMKAGERPDTIHISH-RWFCPRHSEHEENVKP---SENIFKRIFEKFGRVRMVDIPIC---------PYRKSMQADINGMRTFSFEQDVLFEGYVQFSFVRAMDEFRGNKLVRKFVDKTQAINICVSFDKQKHLSDSNIQRRERIRKKFIAKAKAEDEEREK. 294
10 -6.010[O] COG1612 Uncharacterized protein required for cytochrome oxidase assembly  ali follow..  11  35.......................................................................................................ALVRGWLYVVLLVLFALVLVGGATRLTESGL-SITQWQPIHGVIPPLNEWAHVGLVFALPLLFFWVSRRIER-----------------GLGPKLVGILLLGGLQGAIGWWMVASGLVDRVSVS-----QYRLATHLTLAALIFTATMVVARGLAPHSEPAADRSTQRLAGFIVLLALIQIYLGGLVAGLDAGLSYNTWPLMDGKIIPGDLLILVQFVHRLGAYTVFAVALWHMIATRRRLPGSTHARRATLLFVLVLVQASIGIGTLLMQVPLH------LTHQGFALIVLGFAAAHWRGTKGAYPLPQEIVLRS............... 377

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.