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Query: gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIVRRSSRPEPSPRPPSVEVQPRSLast
1 -5.470PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  26  5....................................................................................SVPKSIWRTPPRKRRKWR------------------FTVWRRSSKPPSGNLPKSGETRKQ. 50
2 -4.480PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  10  126............................................................................VGVTKMFGQIYELLTGTKSNGFTILEFMYCIGIII-----GILTFHFGKKRLSVDPTPMEVEMRLYEND 191
3 -4.170PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  18  1............................................................MKRKVKSIRKTMWGVYWKLHDKRKRLVERLKGYLDGLPPETCRRIVLGMVLALYTFGRAAYDIGRNDGS................ 74
4 -4.070HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  15  6...............ARGLFHVLL--LICNRELLLIGKRKDEDDMAKSTKTYEERIRALEKKEQ---------ESIEATKKLIAQRKELEKRKKAEESKKR--------THRLCQIGGAVESVLGCPIEEE.............. 102
5 -3.760PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  12  117...........................DVIVGYRAFSFARTFVNNAISLDQLADAMRLGELGKQIVLISSRAFAALQFQDCEIARASTYHVLRNERDVTAREAY----KSAEADIDGLFMRDIIREKVTNDDP............ 224
6 -3.670PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  15  39............................ITPAVLISGAGTLIMSTSTRVGRATDRVRG--LTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRALQAFYTSVALLVLTSILLGL...................... 131
7 -3.620PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  10  228YFAPWESYFLLAEAAEYGWISNITPKEAYELGIRSSFEYFGVSEYADTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKTQKYI-----AQMPYQVLEIWNDHRRLGLPF.............. 367
8 -3.470PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  15  24.....................QDVACIVMLIGAICFATMQMRQQYLGTNLTI-RRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHNWVVILLIATALEV--TLHRIDYLIEK................ 129
9 -3.310HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  15  7........................................................NDDVLVKKFFSENRIDVPDDGFSRRVMRRLPD-------RTRRISRLWTAVCVVIGLL............................... 57
10 -3.300PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  11  293...........................DYLNLMRDLNIAIDLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKSL----TLEYKNGQ 416

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.