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Query: gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VYRTGGQVLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIVFTGGRTKKGYMTEAEVGRRYALKQGVPARNILFENTSRNTYENLNNIRPVLRANGIASVVIVSDPYHLARAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGRDFFNLast
1 -51.200[S] COG2949 Uncharacterized membrane protein  ali follow..  20  33..PYIYDELQDLPYRQVGVVLGTAKYKGVINQYYRYRIQGALNAYNSGKVNYLLLSGDNA-LQSYNEPMTMRKDLIAAGVDPADIVLDYAGFRTLDSIVRTRKVF---DTNDFIIITQRFHCERALFIALHMGIQAQCYAVPSPKNM-----LTVRLREFGARFSALA......... 191
2 -39.800[S] COG1434 Uncharacterized conserved protein  ali follow..  16  56.........PATPKADAIVVLTGG----------FQRIDQAVDLLKLGAGKRLLISGV---HPSTTRSQIRRNTQSSADLFKCCVDIGHAAIDTIGNATETSLWIRNRGYRTILVVTNNYHMPRSLLELRRAETEFIAYPVVNSDLKTTNLVLKAILLEYGKYSVATLRDV...... 211
3 -35.700[S] KOG4533 Uncharacterized conserved protein  ali follow..  15  72.........PLKNLTHLIIVAGHAVWLGGEGKVFAQHVRSGLDLLSQDDSSLLVFSGGQTRNGPSSEAQSYYSLSMQINSLAARRTTEEFARDSLENVLFSVARFYEVT-QKITVVSFDFKRDRFLNLHRKA--KFHFVGIDPEGGVSDAT----REAERKNAIIPF.......... 255
4 -7.320[M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins  ali follow..  14  227..........................KATLKPEGQAALDQLYSQLSNLDPKDGSVIGSDAYNQGLSEAQSVVDYLISKGIPADKISARGMGENTCDNVKQRAALIDCLAPDRRVEIE............................................................ 333
5 -6.890[G] COG0279 Phosphoheptose isomerase  ali follow..  12  11..............NEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVSN-IFSRYVEAVGREGDVLLGGNSGNVIKAIAAAREKGMKVITLTGKDGEIRVPHFGYADRIQEIHIKVIHIL......... 182
6 -6.580[R] COG3150 Predicted esterase  ali follow..  1.................................................MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYPS-DAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNP.................................... 91
7 -6.160[EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase  ali follow..  14  22...................................ISLKKLVDFHVDAGTDAIVSVGTTGESATLTEHVKVVAKTVEFAEGRLPIIAGTGANATHEAVTFSRL-LNNTGIAGYLSVTPYYNKPTQEGLFLHYNAIAQETDIPVILYNVPGRTAVDMRPETVARLS............ 152
8 -5.780[N] COG5461 Type IV pili component  ali follow..  13  71............AEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTISGSANEVAATAAGRDFARLAVASGVKRNRIVVVSYQAGS................................................................................... 155
9 -5.720[S] KOG4511 Uncharacterized conserved protein  ali follow..  28...............SKFLFITSSIWS------IASFIESQSVVFDRQQMETDVYIMIHKEYSQLID-TLIECFCEDVGTTPTELVAAIQLFNQKDVSQQYKVALEP------LLAAQNFNVFVPMMMRKNIELQLQAL...................................... 141
10 -5.700[S] COG2604 Uncharacterized protein conserved in bacteria  ali follow..  13  233.................AIIVSTG-----PS------LNKQLPLLKEIAPYATLFCIDAS------------PILARAGIKPDIVLSLERVDLTAKFYEE----TPLDFQEGVIFALTS.......................................................... 308

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.