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Query: gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSIIHYLSLHVESARTALKQLLRQPFGTLLTLMMLAVAMTLPLFMHLGIQSGQSVLGKLNESPQITIYMETSAAQSDSDTVRSLLARDKRLDNIRFIGKEDGLEELQSNLDQNLISMLDGNPLPDVFIVTPDPATTPAQMQAIYRDITKLPMVESASMDTEWVQTLYQINEFIRKILWFLSLTLGMAFVLVAHNTIRLQILSRKEEIEITKLLGAPASFIRRPFLYQAMWQSILSAAVSLGLCGWLLSAVRPLVDAIFKPYGLNIGWRFFYAGELGLVFGFVIALGVFGAWLATTQHLLGFKAKKLast
1 -92.500[D] COG2177 Cell division protein  ali follow..  26  48.KTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAATQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGGGALDMLEENPLPAVAVVIPKLFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALTGLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGGALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTKFDINGLSFDECLLLLLVCSMIGWVAAWLATVQHLRHFTPE. 352
2 -18.100[Q] COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component  ali follow..  15  482............ALRLAIGNIHRPGALTPSVVLSLGLGLALLVTLALIDGNLRRELTGDMAERAPNFFF--DIQGSEIEGFRSLLAGAMPEGKIIEVPSAEEARELGLKLGDTVTVNVLGRNITARIAIIDPDASAEEEAAVLKRVTNAYPTITSVRVK-DALDIVNTLLGQLATAVRAAAAVALIASILVLAGALAAGNRARIHDAVVLKTLGATRATLIRAFSYEYVILGLATAVFALFAGGVSAWFVVSRIMTLPSSFLPDVAVATI-----VLALVVTVGIGLAGTWRVLGQVLREL.... 863
3 -17.400[M] COG4591 ABC-type transport system, involved in lipoprotein release, permease component  ali follow..  11  218............................................................................................................................QGYRLFLNDPFQITELPQHFPTQKITDWRVQ--------GEFFQAVRMEKNMMGLLISLIIVVAISNIVTSLSLMVVDKQGEIAILQTQGLTKSQVRSVFIYQGLLVGFVGTLLGAILGVLATLNLTDIVSA--VNPQGVFLPTELSFVQMIFVIGFSLLLSLLSTLYPAYR-AAKVEPAA 388
4 -16.100[V] COG0577 ABC-type antimicrobial peptide transport system, permease component  ali follow..  13  1.........YHAAFLMAMHMMFAHKIRTLLTMLGIIIGIAAVVCVIALGEGAKNKVLAEFSALGNNTIDIQTLNQVDLALLRQQLRKHRLLSGRWFNAHDMATHQAVSVIDKKSQQVITESAVGKTVFIGVSRLYNQSYFQQITVQVKEHIAPDLAEKARKFLQSLQRTTQTLTMMISSIAFISLVVGGIGVMNIMLVSVIERTREIGIRVAVGAKEKDILHQFLIESASVSLLGGMLGVLLSLLLGGLFSAFTDSIKMQFTFSSFLIAFVCS-----SMIGMIFGYFPARNAAR--LKPVVALS 391
5 -9.070[S] COG4652 Uncharacterized protein conserved in bacteria  ali follow..  1....................MQMKKLKYVFLTVAIVLVTAFYAISIENKSQDIIADRLPQGALVMNNINQKSTQIPKNEQVVATLDNYAMSHQSFIVSTDGKLASNMRLFPKANRAENDLLGMGATYHIM----TGHTSSEELSNYLSNKFHVIAVPVQRLTILGEYYNIYGNPQAVTLLISIFLAFVGLAIFVRIS-----ELRKSGIELLSGKTLLNTVFSDSIRDIKFISILTIIAMIGTSSYLLITGLSNLSLHIFALFSILFSSLIF--MLLSCLVSAIIMLILSRSQLNSLIKGKLPTT 292
6 -6.550[S] COG4420 Predicted membrane protein  ali follow..  12  76................................LVLSMVAALQAPVIMMAQNRQTERDRIDAAHDYEVNLK---AEIEIMALHEKLDELRHSQIIGMRDEIVRLAEAVKSIDERLARQQSAS........................................................................................................................................................................................ 161
7 -6.480[S] COG5346 Predicted membrane protein  ali follow..  1....................................................................MTENAQDKARQAVETVVKSPELVEQILSDEYVQIMIARCFHSG----------PLPPPSDLAQYNDIISNGADRIMAMAE-----KEQAVRHETIRQDQTFNRRGQLYGFISAILILLFAVFLVWSGYPATAAS----LAGGTVFALAGAFVI.................................................................................... 134
8 -6.190[R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid)  ali follow..  23....................................................QGVILTIQQHNQSDIWLADESQAERVRGELARFIENPGDPRYLAASWQSG----------QTNSGLRYRRFPFLATLRERAGPVTWIVMLACVLVYIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTHIFMHFSLMHILFNLLWWWYLGGAVEIVITVISALLSGYVQQKF-LSGVVYALMGYVWLRGERD---IYLQRGLIIFALLWIVAGWFDWFGMSMANGAHIAGLIVGLAMAFVDTLNARKR..... 275
9 -6.090[R] KOG4538 Predicted coiled-coil protein  ali follow..  12  1....................................................................MSESAPETVPAKKPAKAKKAAKPENSIPRGQPKSNRPWKTP--KQKFSKIKKTVNRLSFEKKTALRDELRYIKERSKEIKDKRKEDAVQKHQRRVENAERRLANERRS----------EVVQVIKNPAKLKRMKKKQMRMIEK.............................................................................................. 131
10 -5.390[O] KOG2603 Oligosaccharyltransferase, gamma subunit  ali follow..  49..........................................PLLRFNGPKFREYVKSAPRNYSMIVMLTALAPSRQCQICRHAHDEFAIVANSYRFSSTYSFAMVDFDDGSEVFQLLRLNTAPVFMHFPAKGKPKGADTMDIHRVGFAADSIAKFVAERTDITIRIFRPPNYSGTVAMITLVALVGSFLYIRRNNLEFLYNKN--FCFAMISGQMWNHIRGPLVVETYIVMFLNAMIVLGMILLI........................................................... 283

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.