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Query: gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKLKISANGPLNGEITVSGAKNAALPLMCAGLLTSGTLRLKNVPMLADVKTTQKLLQGMGARVLTDNISEFEINGGTVNNTCAPYELVRTMRASILVLGPTLARFGEAQVSLPGGCAIGSRPVDQHLKGLEAMGAEIVIEHGYVKAKGKLKGTRVAMDVVTVGGTENLLMAATLAEGTTVLENCAIEPEVVDLAECLVKMGAKISGIGTSTMIVEGVDELQGCEHSVVPDRIEAGTFLCAVAITGGRVVLRNAAPKTMEVVLDKLVEAGAVIEAGDDWIAIDMRQRPKAVDIRTVVHPGFPTDMQAQFMALNAVAEGSCRVVETIFENRFMHVPELNRMGANITTEGNTAFVQGVEQLSGAVVKATDLRASASLVIAGLAARGETVVEQIYHLDRGYENIEKKLGSVGAKIERVSGLast
1 -89.400[M] COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase  ali follow..  58  1MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGS--VHIDARDVNVFCAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKADGRLKGAHIVMDKVSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGVERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNTQPDTLDAVLAKLRDAGADIEVGEDWISLDMHGRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHVPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKG 418
2 -64.900[E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase  ali follow..  18  16....APRARGPIVSDLAIPGSKSITNRALILAALASTPSTIIDVLRSRDTDLMTDGLRSLGITITEEAVDRYRVEPGQ----LSAGSVECGLAGTVMRFLPPVAAFADGPVHFDGDPQARVRPMTSILDALRSLGVEVDNNNLPVNAGEVPEGGVVEIDAGSSQFVSGLLLSAPRFKNGVTVKRLPSMPHIEMTVDMLRSAGIEIEESE-NQWVVHP-GEILGRTWRIEPDLSNATPFLAAAAVTGGTIKINHWTTQPGDAIRSILERMGCEVELVAQGLSVTGPVALKGIEIDMSDIG----ELTPTVAALAALASTESRLTGHETDRLAALTAEINKLGGKCTELKDGLLIEPASLHGGVWHSYADHRMATAGAIIGLAVDG-VQVEDIKTTSKTFPGFENVWEEMVG....... 430
3 -6.810[E] KOG1709 Guanidinoacetate methyltransferase and related proteins  ali follow..  12  1...............................................................................................................................................................................MEEADQLCLAAKSGDLK-KVQTLIYSGADVTHFDND-----GLTPLMHAAKI--GNAEIVTALLESGA-PSNLSAGDFAMEAGHQETFDLLLKTGIQSELILGTIARNQTKNEYSNQEYLQDRVSFSEDKLMDSESKGVMMAWEKPLMEAHAKAICLNGGHILNVGFGMGLVDTA--IQRYNPVKHTIIEAHP-------VYKRMIESGWGEKENVKIVFGRWQDVLDKLDDNSFDGIFFDT 231
4 -6.350[R] KOG0508 Ankyrin repeat protein  ali follow..  11  3............................................................EGSMNPKLLDTWIIHWEQQQTEMKLVFKNIPYKPA--------QTKIFQGVRLNFAGVKSPCVHE-TLQVLFQQLGEIPNTSQEVISVRGLPPHPCMALRESFLSTCYCEAFNP-KQGLTQGLLLLLCGLVEPVGLVPVAPPGQLSTAGGRRGDAAAHRRLGRGGVPGGPVRRERGGRWLGALRWRDRGGCAAAVGADHLDVVRSLLRRGASVNRTTRT----NSTPLRAACFEGL------LEVVPYLVLEVANRHGHTCLMISCYKGHREIARYLLEQGAQVNWRSA---------------------------------KGNTALHNC--AETSSLEILQLLLGVTGHTNIVE. 332
5 -6.060[R] KOG0509 Ankyrin repeat and DHHC-type Zn-finger domain containing proteins  ali follow..  14  31..............................................................................................................................ENKELANAREALPLIEDSSNCDIVKATQYGIFERCKELVEAGYDVRQPDKENVSLLHWAAINNRLD-LVRFYISKGAVVDQLGGDL----------------------------------NSTPLHWAIRQGHLPMVILLLQHGADPTLIDG--------------------------------------EGFSSIHLAVLFQHMPIIAYLISKGQSVNMTDV----NGQTPLMLSAHKVIGPEPTGFLLKFNPSLNVVDKIHQNTPLHAGNVNAVDKLLEAGSSLDIQN. 247
6 -5.580[A] COG0430 RNA 3`-terminal phosphate cyclase  ali follow..  13  4..........RIDGSYGEGGGQ-ILRTSIALSALLGRPVEIVNIRAKRA-LTGVKVAALLDAEVKGAEKGSTRLYFEPKTLKCGNFSIDIGTAGSISLIVQTLAAPCPTQITVTGGTDVAWAP-FVFTKVLERFGAKLSIE--------PRGGGRAVVRAEPVKRLKAVESEEF-ISHAVNLPPHVAERQAKAAREELSKMGLDADIAIEVRNDGLG----PGSGVVIWAV-SDAGNVIGGDSLGERGKPAETVGKEAAQKLIAVLKTRAS-----------------------------VDPHMADMAVLYMALAEGRSRISTMHLKTNMYIIEQFLRVKFSTMEKAGRYTIE............................................................... 340
7 -5.370[S] COG4274 Uncharacterized conserved protein  ali follow..  19  48.................................................................................................................................................................................................................................................................................................................MTTYIVLMNWTEQGAKSVRDSPKRLDAARKQLGDMGGSFK---AFYLTMGEYDM--AVVEAPDDAVLARFSLM-LAAAGNVRTRTLKAFPE--FAYREIISSLG........ 144
8 -5.270[I] KOG0817 Acyl-CoA-binding protein  ali follow..  15  109................................................................................................................................QAMQEYIAVVKKLDPGWNPQIPEKKGKEANTGFGGPVISSLYHEETIREEDKNIFDYCRENNIDHITKAIKSKNVDVNVKDEE-----------------------------------GRALLHWACDRGHKELVTVLLQHRADINCQDN--------------------------------------EGQTALHYASACEFLDIVELLLQSGADPTLRDQ----DGCLPEEVTGCK------TVSLVLQRHTTGK................................. 281
9 -4.890[O] KOG4412 26S proteasome regulatory complex, subunit PSMD10  ali follow..  13  11................................................................................................................................................................................MRDEELFKAAEWGDSSLFMSLSEELSKSLNFRNE--------DGRSLLHVAASFGHSQIVKLLSSSDEAKTVINSKDAASIGNAELVEVLLTRGADVNAKNN--------------------------------------GGRTALHYAASKGRLEIAQLLLTHGAKINITDK----VGCTPLEGAEIDATDKMGQTALMHSVI--------CDDKQLKVSMDQVAFLLIRHGADVDVED. 219
10 -4.840[R] KOG2384 Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains  ali follow..  10  1.......................................................................................MNSQNELHPNWLALTTLPLQLKRFVRAGDPDFIAESPKAVKHQIDGLNGAEAREFYKEVLDAPTTCQPNLPSTHKTAQTRREPERILVPFDKSKFFRLATSNKVEELSQMKAS-EEDLNSRDSF-----------------------------------GWTALMMAACEGATEAVSWLVQRGVQVETSDK--------------------------------------SGNTALKLAQRKGHLDVVHLLESLPILEETSEEDESVDGNNPFYCEIYKETPWPIHQTSTVHQFNLKALPAHKLHKFNISAKNRGLQLMVKQGWDQEHGLG 260

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 7 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.