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Query: gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLQRTLAKSISVTGVGLHSGERVALTLHPAPENSGISFRRTDLDGEMGEQIKLTPYLINDTRLSSTIVTDKGVRVGTIEHIMSALSAYGIDNALIELNAPEIPIMDGSSLPFIYLLQDAGVVDQKAQKRFLKILKPVEIKEAGKWVRFTPYDGFKVTLTIEFDHPVFNRSSPTFEIDFAGKSYIDEIARARTFGFMHEVEMMRAHNLGLGGNLNNAIVIDDTDVLNPEGLRYPDEFVRHKILDAIGDLYIVGHPIVGAFEGYKSGHAINNALLRAVLADETAYDRVEFADSDDLPDAFHELNIRTCGLast
1 -112.000[M] COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase  ali follow..  51  3.QQRTLNNTIRATGVGLHSGNKIHITLRPAPVNHGIVFRRVDLDPVVE--IPASGDLVTEVILCTGL-TRNGAKVQTVEHLMSAFAGLGIDNAIVDLSSAELPIMDGSSAPFVFLLQSAGILEQNAAKRFIRIKRSVEVRQGDKVAKFSPYDGYKLGFTIEFDHPMIPHKQSHYEMEFSTAAYIKEISLARTFGFMHDLEDMRERNLGLGGSMDNAILLDDFRVLNEDGLRYGNEFVRHKILDAIGDLYLIGGPILGAYEAFKSGHALNNKLVRAVLADETSWEWISFPSSAAEQPPVVYTHPAC.. 303
2 -7.730[O] COG0602 Organic radical activating enzymes  ali follow..  12  1MQYPINEMFQTLQGEGYFTGVP-AIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGA-----ASSEDLLAVINRQGYTARHVVITGGE-PCIH-DLMPLTDLLEKSGF--------------SCQIETSG---THEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSD-ALQPISQKEDATRLCIETCIARNWRLSMQT--HKYLNI............................................................... 222
3 -6.070[I] COG1182 Acyl carrier protein phosphodiesterase  ali follow..  18  9................................................................SSILAGYSQSNQLSDYFVEQWREKHSADEITDLAANPIPVLDGE---LVGALRPSDAPLTTRQQEALALSDELELKAHDVIVIAAPMYNFNISTQL--------------------KNYFDLVARAVTFRYTEN-----PEGLVTGKKA--IVITSRGGIHKDGPTDLVTPYLST-FLGFIG............................................................. 165
4 -5.460[V] COG4167 ABC-type antimicrobial peptide transport system, ATPase component  ali follow..  12  6........................................................................LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQT---LAIIGENGSGKSTLAKMLAGMIEPTELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLAPGQLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ-MMKHISDQVLVMHQGEVVERGSTADVLASPL.......................... 243
5 -5.400[P] COG2897 Rhodanese-related sulfurtransferase  ali follow..  10  25........................................VEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIEDTVILYGGEKVKLLDGGRKKWEL---------------------------DGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELA-KLYADAG-IAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEY........................ 265
6 -4.880[NU] COG1450 Type II secretory pathway, component PulD  ali follow..  19  436................................................................TALASNNKNDILATPSIVT------LDNKLASFNGQDVPVLSGSQTT--------------------NVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEV--------SVDSSSNSTLGPTFNTR--------------------TIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDI-----PLVGQLFRYTSTERAKRNLMVFI............................... 593
7 -4.870[T] COG1716 FOG: FHA domain  ali follow..  17  273..NILLSKNPEFKGISMQSPEPGIFVI------SGYL-------KTEEQAACLADYLNLHFNYLSLLDNKVIIESQVMKALAGHLVQSGFANVHVSFTNGEAVL--------------TGYINNKDADKFRTVVQELQDIAGIRAVKNFVVLLPAEEGVIDLNMRYPGRYRVTGFSKCGDISIN--VVNGRIL--------------TRGDILDGMTVIQSHCILEREGLKYKIEYNK..................................................................... 469
8 -4.810[L] COG0266 Formamidopyrimidine-DNA glycosylase  ali follow..  3.........................................................................ELPEVETTLRGIAPHIEGKTVEAVVLRQLKLRWQINPDLGEILSGRQVLSCGRRAKYLGMSGSLRIFTPSDGRIGRSDRHDHVDIVFSDGTVMR-------------------YRDPRKFGAILWYEGIEEHHPLLEKLGPEPLSEAFCTDYLYVRLKAQKRAVKLALMD-VGNIYANESLFRAGISPHRPANRLKKKECALLVET............................ 207
9 -4.730[E] COG1446 Asparaginase  ali follow..  15  6..............IAIHGGA---------------AIARAQMSHEQELRYIQALSEIVES--GQKMLEAGDSALDVVTEAVRLLEACPLFNATHELDAC---VMDGNTLKA------GAVAGVSHVRHPVLAARLVMERSPHVLMVGEGAENFAFSQGMARVSP---------DIFSTPARYEQLLAARAAGEMALDHSGAPLDETKKMGTV-GAVARDKFGNLSTGGM-------TNKLPGRVGDSPLVGA---GCYANNASVAVSCTGTGEVFIRTLAAYDIAALMEYGGLSLADACERVV... 264
10 -4.720[R] COG3903 Predicted ATPase  ali follow..  11  9......YRLVTLRGEG--VGK-TRLAIQIAAASEGLCFVDLAPIADPGMVSTTAAHALGLIDRPGSSTFDT-MVLDNCEHVLDALSILATSRESIGVTGEVTSLLDG--MPLAIELAAARLRSLSPNEIANSLDDRFRLLTGGA--RSTVQRQQTLRASMDWSYALLTDTERILFRRLAVFVGGFDLTAASEVAAAGGDDFVERYSVQLTLLVDKSLVVAEES----------RGSTRYRLLETVRQYALEKLNESEEIDGVRARHR........................................ 323

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.