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current user: public |
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Query: gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58], from N.meningitidis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . | |||||||
# | Score | Template | Links and tools | %id | First | GDAEDNLLSIQSGYRALLQKQNNLDGKIIGMQSDLEDARRRLQTAQADIARLEAEIPAAMAQKARQAEDLRQIGVRLDHAWNAVYGAGGTKASGN | Last |
1 | -6.240 | IDP02689 hypothetical protein FTT0903 [Francisella tularensis subsp. tularensis SCHU S4] FTT0903 [Francisella tularensis subsp. tularensis SCHU S4] | ali follow.. | 11 | 88 | ..............KISNKDEAAAIAAKKDIQEKLIKAAQDSVHLQKRLKRYTKKADVYKQKSQQLDEQAKQTQQSVDKTTQEI........... | 157 |
2 | -5.630 | IDP91951 general stress protein GSP-781 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100010278 [Streptococcus pneumoniae str. Canada MDR_19A] | ali follow.. | 13 | 30 | ..TDDKIAAQDNKISNLTAQQQEAQKQVDQIQEQVSAIQAEQSNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTS... | 119 |
3 | -5.410 | IDP00476 hypothetical protein YPO0063 YPO0063 [Yersinia pestis CO92] | ali follow.. | 14 | 77 | ...QQDIAEKEKSVQQQKKQRSSLLDQLKQQENTISQTSRSLRETQAALAELSKDIASLTTSIEKLQNQQSQQQSILSKQLAAAFKQG....... | 161 |
4 | -5.390 | IDP02364 putative outer membrane channel protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0365c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819] | ali follow.. | 11 | 285 | .........................STILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLESGDLDTLVKGGSKTWNPIFHWGEIYQN.. | 362 |
5 | -5.350 | IDP01373 NlpD-related protein VC0335 [Vibrio cholerae O1 biovar El Tor str. N16961] | ali follow.. | 8 | 46 | ...KSEISRQQQSLAEQQKSLDQLQQALKQQELGINSIENQITKTKNDLENANRNIAQLNSNIQALETQKQQQADKLERLLQTYYLTK....... | 130 |
6 | -5.290 | IDP05348 putative multidrug efflux pump, outer membrane protein [Clostridium difficile 630] CD2408 [Peptoclostridium difficile 630] | ali follow.. | 15 | 123 | ..MEDQINDITNKFNDLVSRENELD-----IKNNLEIKTKEIKDMSLETESAELELQTLQNTQKAKLQELKNNQDYFKLL............... | 207 |
7 | -5.250 | IDP05645 hypothetical protein CD3297 [Clostridium difficile 630] CD3297 [Peptoclostridium difficile 630] | ali follow.. | 13 | 19 | .........VGTIFRDYSNEETVYTSKDKSIRKEIKMTRKSIKELTKEKDKLDKEINSMKQNQKNSEEISEIETLRDSLSYSDVKGSG....... | 97 |
8 | -5.250 | IDP05388 hypothetical protein BA_2383 [Bacillus anthracis str. Ames] BA_2383 [Bacillus anthracis str. Ames] | ali follow.. | 10 | 131 | KAASKFMKNAADLIIDGATNSTLNSATIENTKHALGLADQHIVIALSTLTEVEEKL....................................... | 186 |
9 | -5.170 | IDP90938 NMPDR 243277.1.peg.3917 [Vibrio cholerae O1 biovar El Tor str. N16961] | ali follow.. | 8 | 85 | .................KLTSLKVHCDFVALPDYPTITKLRVLSRGQQLIRLDFEDKFENTDAQLILSRMESALPKVRAVILSDYAKG....... | 155 |
10 | -5.150 | IDP05734 putative phage shock protein [Clostridium difficile 630] CD1470 [Peptoclostridium difficile 630] | ali follow.. | 16 | 15 | ....................KNEKDVLLLDVRTKDEFKEYKIENANISLQELINNIDEIYDYKDKKVVVYCRSGHRSVTACNLLAEEGFEHL... | 87 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Ye Y, Osterman A, Overbeek R, Godzik A. Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics. 2005 Jun 1;21 Suppl 1:i478-i486. |