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Query: gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst GDAEDNLLSIQSGYRALLQKQNNLDGKIIGMQSDLEDARRRLQTAQADIARLEAEIPAAMAQKARQAEDLRQIGVRLDHAWNAVYGAGGTKASGNLast
1 -6.240IDP02689 hypothetical protein FTT0903 [Francisella tularensis subsp. tularensis SCHU S4] FTT0903 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  88..............KISNKDEAAAIAAKKDIQEKLIKAAQDSVHLQKRLKRYTKKADVYKQKSQQLDEQAKQTQQSVDKTTQEI........... 157
2 -5.630IDP91951 general stress protein GSP-781 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100010278 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  13  30..TDDKIAAQDNKISNLTAQQQEAQKQVDQIQEQVSAIQAEQSNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTS... 119
3 -5.410IDP00476 hypothetical protein YPO0063 YPO0063 [Yersinia pestis CO92]  ali follow..  14  77...QQDIAEKEKSVQQQKKQRSSLLDQLKQQENTISQTSRSLRETQAALAELSKDIASLTTSIEKLQNQQSQQQSILSKQLAAAFKQG....... 161
4 -5.390IDP02364 putative outer membrane channel protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0365c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  285.........................STILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLESGDLDTLVKGGSKTWNPIFHWGEIYQN.. 362
5 -5.350IDP01373 NlpD-related protein VC0335 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  46...KSEISRQQQSLAEQQKSLDQLQQALKQQELGINSIENQITKTKNDLENANRNIAQLNSNIQALETQKQQQADKLERLLQTYYLTK....... 130
6 -5.290IDP05348 putative multidrug efflux pump, outer membrane protein [Clostridium difficile 630] CD2408 [Peptoclostridium difficile 630]  ali follow..  15  123..MEDQINDITNKFNDLVSRENELD-----IKNNLEIKTKEIKDMSLETESAELELQTLQNTQKAKLQELKNNQDYFKLL............... 207
7 -5.250IDP05645 hypothetical protein CD3297 [Clostridium difficile 630] CD3297 [Peptoclostridium difficile 630]  ali follow..  13  19.........VGTIFRDYSNEETVYTSKDKSIRKEIKMTRKSIKELTKEKDKLDKEINSMKQNQKNSEEISEIETLRDSLSYSDVKGSG....... 97
8 -5.250IDP05388 hypothetical protein BA_2383 [Bacillus anthracis str. Ames] BA_2383 [Bacillus anthracis str. Ames]  ali follow..  10  131KAASKFMKNAADLIIDGATNSTLNSATIENTKHALGLADQHIVIALSTLTEVEEKL....................................... 186
9 -5.170IDP90938 NMPDR 243277.1.peg.3917 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  85.................KLTSLKVHCDFVALPDYPTITKLRVLSRGQQLIRLDFEDKFENTDAQLILSRMESALPKVRAVILSDYAKG....... 155
10 -5.150IDP05734 putative phage shock protein [Clostridium difficile 630] CD1470 [Peptoclostridium difficile 630]  ali follow..  16  15....................KNEKDVLLLDVRTKDEFKEYKIENANISLQELINNIDEIYDYKDKKVVVYCRSGHRSVTACNLLAEEGFEHL... 87
FFAS is supported by the NIH grant R01-GM087218-01
1 3 2 7 7 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.