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Query: gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGNNTSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKAANDDVTAAAAANGKKIDTKHLPSTCRDASDASLast
1 -24.800IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  46IPQYQNYVKKSAIGVGLANITALKTNIEDYIATEGSFPATTAGTAAGFVEDMGDGKIVIAPTASGALGGTIKYTFDAGVVSSSKIQLARDANG---LWTCS-----------------------TTVTSEIAPKGCTAGATIN 167
2 -19.900IDP02679 Type IV pili fiber building block protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0889c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  16  29IPIYSSYKERAAIIESMNIIGNVKASIQNDINNNLDISQQTYDTP-------TGVTVTGSTSGATIDINLSQTSPQHFTNDNDIIRLSGVVSGSTFQWTCSHN------------------VNASTLTASNVPHTCSSTFSA. 146
3 -9.360IDP05403 gene: comGC; comG operon protein 3 [Bacillus anthracis str. Ames] BA_4464 [Bacillus anthracis str. Ames]  ali follow..  12  27IPDVVTQRSSVEGKGCKAYVKSIEAQVQVYQLQHNKIPTLKELSDEKYITADKCPNGESIHISNDGTVTS......................................................................... 96
4 -8.780IDP05642 putative type IV pilin [Clostridium difficile 630] CD3294 [Peptoclostridium difficile 630]  ali follow..  11  29LVKYSKVQESAKLNADYTNAANIVTAASMAINDDEKTIDSLS..................................................................................................... 70
5 -7.490IDP04715 general secretion pathway protein G [Yersinia pestis CO92] YPO0813 [Yersinia pestis CO92]  ali follow..  20  29IPSLMSNKNRADQQKAVSDISALENALDMYRLDNGDYPTEQQGIA.................................................................................................. 73
6 -6.260IDP01377 MSHA pilin protein MshA VC0409 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  30APRFLNLQGDAREASLEGLRGAVAGAMGISYGRAAIKGIETLDYTAYTDANTPGTVIDGIAHKFG.............................................................................. 94
7 -6.040IDP05570 hypothetical protein BAS5100 [Bacillus anthracis str. Sterne] BAS5100 [Bacillus anthracis str. Sterne]  ali follow..  10  23.PSKGEYTAAKQFMKRNDVSKKLDEVQKENEEGLGDLASAGKKLAKKYVEPQVGLLIDHYTKRDDYIFFSTYKTEFDIGGEHYKYV......................................................... 110
8 -5.940IDP90123 B15R-like protein [Monkeypox virus] MPXV_ZAI1979_005_035 [Monkeypox virus]  ali follow..  15  7...YEDAVFYFVDDDEICSRDSIIDLIDEYITWRN............................................................................................................ 38
9 -5.930IDP91350 V10 pilin [Vibrio vulnificus CMCP6] VV1_3114 [Vibrio vulnificus CMCP6]  ali follow..  21  16APRFLNLQSDARRSVVEGLAGAVTNAAEMAYGK.............................................................................................................. 48
10 -5.860IDP00194 putative membrane protein YPO0983 [Yersinia pestis CO92]  ali follow..  10  127.PISEEIIFRGFLLNAGIGFGRRGRLLAVVITS-ALVHTQYLYPATFVSLFVFSAILCEVRIRTGSLLMPMVLHSANNIASVAWVLTL....................................................... 215

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 8 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.