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Query: gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst MKNSFCGQFACCANGILLFFTEWLPMSLRTGILWRFERKVCLELVEMVRCRHECLISAYRQSAHPNLCISGGKNEICGLast
1 -2.900HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  29  28............................................LKRLENRKKYLEKGERQKRTHRLCNLGGTIE... 58
2 -2.840PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  12  2...........CTTNAVISYTINMDTQKKHNLSGTI---VSCFLLLAGACDNSDRIETETQANGVLLNFNASTID... 67
3 -2.720PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  21  1MDPPVCGRFGC----YLLLFA--CPIIFASIMKKEFIGRTAKSLSLALAIFSGCIFGS.................... 55
4 -2.650HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  14  6.........................................AIPMKAFDPNYKLLDEMYQDDYYPAFLVDKVKDEL.. 40
5 -2.380PB019827 gi|67919427|ref|ZP_00513005.1| conserved hypothetical protein [Chlorobium limicola DSM 245]gi|67782966|gb|EAM42367.1| conserved hypothetical protein [Chlorobium limicola DSM 245]  ali follow..  210.............DASIYVYEDDLPLVFNSTGFNGRGKAFFILGTWDVTKNLKLAGKFETTWYDDREVYGDSTDQRNT 274
6 -2.260PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  54...............EEDWFGDLVRMMNQEGCRENGHLQINKVVMQALTELHTQLLASSKFPFYSAE........... 105
7 -2.090PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  13  5ISGSDCGPTPTSSTLPLTPYTPAM-PFLTRSRIARVASLLSAGVLALVLLSCDGVGDFGDTNEDPT............ 69
8 -2.030PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  11  13..RSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTHQPGLGEVYISTGSLYLCTTA....... 100
9 -1.900HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  1............................................MDMTDNNDDVLVKKFFSENRIDVPDDGFSRRV.. 32
10 -1.890PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  17  13...................LSNFLLEGTIMKLTVYFDGTFWFALVEHVNRKGQYKVFRYPFGKEPK............ 59

FFAS is supported by the NIH grant R01-GM087218-01
1 2 8 5 9 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]