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Query: gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VYRTGGQVLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIVFTGGRTKKGYMTEAEVGRRYALKQGVPARNILFENTSRNTYENLNNIRPVLRANGIASVVIVSDPYHLARAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGRDFFNLast
1 -39.200PF02698.17; D5CMM5_SIDLE/81-243; DUF218 topsan domain  ali follow..  24  1...............DAIVVLGGGTNGDTVSKETLERLRYAARLYRQTGKPILVTGGT-PLGNDLSEAAQMKKTLEQEFNVPV-RWAEGASNNTLENARLSREVLKKEGISRIYLVTHAWHMPRAVQVFQAAGFQVYPAPTAYTTRYQLDRDSRIFMHEMIG............... 163
2 -6.950PF13743.6; U5L7Y1_9BACI/27-219; Thioredoxin  ali follow..  85................SIAIKAAELQGRKAGIRFLRKLQEVLFL----------------EKQNISNFDVLKSCAQNVGLDVVEFVADIHSDSAAKAFQCDLKITSEMDVQEILVFFNENIEEEGIKVTGYYPYEVY........................................ 191
3 -6.560PF05728.12; Q32BT7_SHIDS/4-188; Uncharacterised protein family (UPF0227 topsan)  ali follow..  1....................................................LLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYPS-DAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNP.................................... 88
4 -6.510PF00149.28; MRE11_COPC7/23-270; Calcineurin-like phosphoesterase  ali follow..  37...........KNEVDFILLAGDLFHENKPSRDCLYQTLALLEYTLGDKPIQVELLSDPDEGKAAGFSFPAINYEDPNFNISIPVFSIHGNHDDPQGPGVNGALCALDVLSVSGLLN............................................................ 143
5 -6.500PF09476.10; Q98BF6_RHILO/37-236; Pilus biogenesis CpaD protein (pilus_cpaD)  ali follow..  13  35............AEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTISGSANEVAATAAGRDFARLAVASGVKRNRIVVVSYQAGS................................................................................... 119
6 -6.190PF04311.13; O83576_TREPA/55-376; Protein of unknown function (DUF459 topsan)  ali follow..  11  169..........QQEPYAAVIMFGMNTKTARWERAYEQKMRACLNIILHTVPKVYLLGRNKQLNEKLVYIEHVQKKVVAQYDPQRVRYYSLKPIVPGVHGTYASAIRDTHGRWVHVMHKDGIHYTIEAYVMETL............................................. 311
7 -6.080PF00532.21; MALI_ECOLI/64-342; Periplasmic binding proteins and sugar binding domain of LacI family  ali follow..  14  84.................VIFASRASYLDDVDTVRPDNMQAAQLLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQS......................................... 206
8 -6.080PF01973.18; Q7VF82_HELHP/206-379; Protein of unknown function DUF115 topsan  ali follow..  11  29.................AIIVATG-----PS------LSKQIPYLKQIQDYATIFCID-----------ASFPILAKEGIKPDIVFSLERVELTAKFYED----TPKWAHKDVIFAITS.......................................................... 104
9 -6.070PF08386.10; TAP_STRCO/435-533; TAP-like protein  ali follow..  16  27............KGLPPVLIVQSERDAATP-------YEGAVELHQRFRGSRLITERDAGSHGVTGLVDRVDTYLLTGGTDARDVT........................................................................................... 98
10 -5.990PF00701.22; YJHH_ECOLI/3-296; Dihydrodipicolinate synthetase family  ali follow..  10  22...................................KAMREVADFLINKGVDGLFYLGTGGEFSQMNQRMALAEEAVTIVDGRVPVLIGVGSPSTDEAVKLAQH-AQAYGADGIVAINPYYWKVAPRNLDDYYQQIARSVTLPVILYNFPDLTGQDLTPETVTRLA............ 152

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24