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Query: gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst MKNSFCGQFACCANGILLFFTEWLPMSLRTGILWRFERKVCLELVEMVRCRHECLISAYRQSAHPNLCISGGKNEICGLast
1 -6.490d2gtta1 a.260.1.1 (A:6-448) Nucleoprotein {Rabies virus [TaxId: 11292]}  ali model 3D-neighbors follow..  21  231..........CSGLVSFTGFIKQINLTAREAILYFFHKNFEEEIRRMFEPGQET--SPYSSNAVGHV........... 303
2 -6.280d2qvja_ a.260.1.1 (A:) Nucleoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}  ali model 3D-neighbors follow..  24  224..........CAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEI--SPYWSVKNPAF........... 296
3 -5.790d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}  ali model 3D-neighbors follow..  16  24.....CCSFYNCHKCLARL------ENCPKGLHYNAYLKVC-DWPSKAGCTSVNKECHLWKT................ 73
4 -5.680d3ir4a1 c.47.1.0 (A:1-75) automated matches {Salmonella enterica [TaxId: 99287]}  ali model 3D-neighbors follow..  12  1...............MKLYIYDHCPFCVKARMIFG-LKNIPVELNVLQNDDEATPTRMIGQKMVPILQKDDSR..... 57
5 -5.480d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  6TKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGT..... 78
6 -5.360d1v63a1 a.21.1.1 (A:8-95) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  20  6............MNGYQKFSQELLSRMVEIGSRWQ-QKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ............ 74
7 -5.310d1usma_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  1....................MDWEERENLKRLVKTFAFPNFREALDFA---NRVGALAERENHHPRLTVEWGRVTV.. 53
8 -5.280d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  19........LSRYLSSYIHVLNKFISHLRRVATL-RFERTTLIKFVKKLRFYNDSVLS..................... 66
9 -5.280d4c45a_ d.74.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  16.................LKAAGWSELSERDAIYKEFSFHNFNQAFGFMS---RVALQAEKMNHHPEWFNVYNKVQI.. 71
10 -5.160d1qrva_ a.21.1.1 (A:) HMG-D {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  13  34.........................VAKRGGELWR-DKSEWEAKAAKAKDDYDRAVKEFEANG............... 73

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 7 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.