current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: tr|A0AVG2|A0AVG2_HUMAN TRPM8 protein OS=Homo sapiens GN=TRPM8 PE=2 SV=1, from NEW_HUMAN_DOMAINS

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50
1 -4.800d1weea1 g.50.1.2 (A:8-66) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  21  14.........CGTKDDDGERMLACDGCGVWHHTRCIGINNADA........ 46
2 -4.630d1ugia_ d.17.5.1 (A:) Uracil-DNA glycosylase inhibitor protein {Bacteriophage pbs2 [TaxId: 10684]}  ali model 3D-neighbors follow..  12  41.....LVHTAYDESTDENVMLLTSDAPEYKPWALVIQDSNGENK...... 79
3 -4.440d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]}  ali model 3D-neighbors follow..  13....GVIPYTFAGVSGADQSAILSGMQELEEKTCIRFVPRTTESDYVE.. 56
4 -4.130d3edha_ d.92.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24..............TGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIV.. 57
5 -4.120d1we9a1 g.50.1.2 (A:8-58) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  17  5.........CGESYAADEFWICCDLCEMWFHGKCVKITPARAEH...... 39
6 -3.830d3kqia1 g.50.1.2 (A:1-69) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  5....PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEE.......... 40
7 -3.800d2qr3a1 c.23.1.0 (A:2-125) automated matches {Bacteroides fragilis [TaxId: 295405]}  ali model 3D-neighbors follow..  15  64..GLFWLHEIKRQYRDLPVVLFT----AYADIDLAVRGIKEGASDFVVKP 107
8 -3.570d1goia3 d.26.3.1 (A:292-379) Chitinase B {Serratia marcescens [TaxId: 615]}  ali model 3D-neighbors follow..  12  65.........................QRLWNDKTKTPYLYHAQNGLFVTY. 88
9 -3.530d1gh6a1 a.2.3.1 (A:7-117) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}  ali model 3D-neighbors follow..  21  1...........REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEF--HP 37
10 -3.500d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}  ali model 3D-neighbors follow..  18  7...........RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLL--HP 43

FFAS is supported by the NIH grant R01-GM087218-01
1 3 2 7 7 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.