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Query: 2du3_A mol:protein length:534 O-phosphoseryl-tRNA synthetase, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKFDPQKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPYPVMNLGLGVERLAMILYGYDDVRKMVYPQIHGEIKLSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEPSPCSFLAFEGEMMGRNVRVYVVEEEENTKLCGPAYANEVVVYKGDIYGIPKTKKWRSFFEEGVPTGIRYIDGFAYYAARKVEEAAMREQEEVKVKARIVENLSDINLYIHENVRRYILWKKGKIDVRGPLFVTVKAEIELast
1 -163.0002du3_A mol:protein length:534 O-phosphoseryl-tRNA synthetase  ali model  100  1MKFDPQKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPYPVMNLGLGVERLAMILYGYDDVRKMVYPQIHGEIKLSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEPSPCSFLAFEGEMMGRNVRVYVVEEEENTKLCGPAYANEVVVYKGDIYGIPKTKKWRSFFEEGVPTGIRYIDGFAYYAARKVEEAAMREQEEVKVKARIVENLSDINLYIHENVRRYILWKKGKIDVRGPLFVTVKAEIE 534
2 -127.0002du7_A mol:protein length:549 O-phosphoseryl-tRNA synthetase  ali model follow..  53  11MRFDIKKVLELAEKDFETAWRETRALIKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTKFKFKPDEKKSKYYTPETQTEVYAYHPKL--------GEWIEVATFGVYSPIALAKYNIDVPVMNLGLGVERLAMIIYGYEDVRAMVYPQFY-EYRLSDRDIAGMIRVDKVPILDEFYNFANELIDICIANKDKESPCSVEVKRENGERRVIKVEIFENEPNKKLLGPSVLNEVYVYDGNIYGIPPTPILKKAKEEGVSTNIRYIDGIIYKLVAKIEEALVSNVDEFKFRVPIVRSLSDINLKIDELALKQIMGENKVIDVRGPVFLNAKVEIK 549
3 -64.8004p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit  ali model follow..  18  2..ENLDALVSQALEAVRHTQIRVHYLGKKGELTQVMKTLGDLPAEERPVGALINVAKEKVQDV----NARKTELEGAALAARLAAERI----------DVTLPGRGQLSGGLHPVTRT------LERIEQCFSRIGYEVAEGPEVEYHNFEALNIPGHHPARAMHDTFY-------FNANMLLRTHTSPVQVRTM----ESQQPPIRIVCPGRVYRCDS--DLTHSPMFHQVEGLLVDEGVSFADLKGTIEEFLRAFFEKQLEVRFRPSFFPFTEPSAEVDIQCVICSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSNIDFQGFAFGMGAERLAMLRYGVNDLRLFFD---------NDLRFLGQFR....................................................................................................................................................................... 338
4 -63.5002rhq_A mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  21  1......................................MGSSSSGLVPGSHMGTELME-------------------KLNQQLAEETI----------DVTLPSRQISIGSKHPLTRT------VEEIEDLFLGLGYEIVDGYEVEYYNFEALNLPKSHPARDMQDSFY-------ITDEILMRTHTSPVQARTMEK--RNGQGPVKIICPGKVYRRDS-DDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDYSGFAFGMGPDRIAMLKYGIEDIRYFYT---------NDVRFLEQFKAVE.................................................................................................................................................................... 284
5 -61.5003pco_A mol:protein length:327 Phenylalanyl-tRNA synthetase, alpha subunit  ali model follow..  17  2..SHLAELVASAKAAISQANVRVEYLGKKGHLTLQMTTLRELPPEERPAGAVINEAKEQVQQA----NARKAELESAALNARLAAETI----------DVSLPGRRIENGGLHPVTRT------IDRIESFFGELGFTVATGPEIEYHNFDALNIPGHHPARADHDTFW-------FDTTRLLRTQTSGVQIRTM----KAQQPPIRIIAPGRVYRNDY--DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDV-----------MGKNGKWLEVLGCGMVHPNVLRNVGIDYSGFAFGMGMERLTMLRYGVTDLRSFFE---------NDLRFLKQFK....................................................................................................................................................................... 327
6 -60.7001b70_A mol:protein length:350 PHENYLALANYL-TRNA SYNTHETASE  ali model follow..  17  1MLEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRRGQELNAIKAALEAA----EAREKALEEAALKEALERERV----------DVSLPGASLFSGGLHPITLM------ERELVEIFRALGYQAVEGPEVEFFNFDALNIPEHHPARDMWDTFWEGPLGEEVEGRLLLRTHTSPMQVRYM----VAHTPPFRIVVPGRVFRFEQ-TDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWW----------PEGGKWLELGGAGMVHPKVFQAVDAYVTGFAFGLGVERLAMLRYGIPDIRYFFG---------GRLKFLEQFK....................................................................................................................................................................... 347
7 -59.7003l4g_A mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  22  181FSTSISKQETELSPEMSGSWRDRPF----KPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIES----------SFWNFDALFQPQQHP-----------------------ARDQHDTFFLRDPAEALQLPMDY----VQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAKKPFTPVKYFSIDRVFRNET-LDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFK--PAYNPYTEPS--MEVFSYHQGL--------KKWVEVGNSGVFRPEMLLPMGLNVSVIAWGLSLERPTMIKYGINNIRELVGHKV-------NLQMVYDSPLCRLDAEPRPPPTQEA....................................................................................................................................................... 507
8 -46.8004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  15  14LLNPKDEISLNSGKPFRELESELLSR-RKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFR--------------------------------------------------------------------------------VDKNFCLRPMVAPNIFNYARKLDRALPDPIKIFEIGPCYRKES-DGKEHLEEFTMLNFFQMGSGCTRENLESIITDFLNHLGIDFKIVG--DSCSVYGD---TLDVM--------------HGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYYNGISTNL.............................................................................................................................................................................. 267
9 -46.8004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  15  32LLNPKDEISLNSGKPFRELESELLSR-RKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFR--------------------------------------------------------------------------------VDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKES-DGKEHLEEFTMLSFIQMGSGCTRENLESIITDFLNHLGIDFKIVG--DSCMVYGDTLDVMH-----------------GDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYYNGISTNL.............................................................................................................................................................................. 285
10 -45.6002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  15  36.KDEISLNSGKPFRELESELLSR----RKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERM--------------------------------------------------------------------------------GIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKES-DGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVG--DSCMVYGDTLDVMH-----------------GDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSGSYYNGISTNL.............................................................................................................................................................................. 285
11 -44.7004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  14  32LLNPKDEISLNSGKPFRELESELLSR-RKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFR--------------------------------------------------------------------------------VDKNFCLRPMLAPNLGNYLRKLDRALPDPIKIFEIGPCYRKES-DGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVG--DSCMVFGDTLDVMH-----------------GDLELSSAVVGPRPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYYNGISTNL.............................................................................................................................................................................. 285
12 -40.6003cmq_A mol:protein length:415 Phenylalanyl-tRNA synthetase, mitochondrial  ali model follow..  13  11.........PGSVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSP--------------------------------------------------------------VTTWQNFDSLLIPADHPSRKKGDNYY-------LNRTHMLRAHTSAHQWDLLHAGLD------AFLVVGDVYRRDQ-IDSQHYPIFHQLEAVRLFSKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF------------HGEWLEVLGCGVMEQQLVNSAGAQRIGWAFGLGLERLAMILYDIPDIRLFWC---------EDERFLKQFCVSNINQKVKFQPLSK---------------------------------------------PAVINDISFWLPS--NYAENDFYDLVRTIGLVEKVDLIDKFVHPKTHKTSHCYRITYRHME-RTLSQREVRHIHQALQEAAVQLL-----GVEGR............ 414
13 -37.9003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  15  20.KSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDND---------------------------------------------------------------------------------ELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGIDFKIVG--DSCMVFGDTLDVMH-----------------GDLELSSALVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYYNGISTNL.............................................................................................................................................................................. 282
14 -37.0004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  15  6.KSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERM--------------------------------------------------------------------------------GIDNDTELSKQIFRVDKNFCLRPMLAPNLANYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVG--DSCMVFGDTLDVMH-----------------GDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYYNGISTNL.............................................................................................................................................................................. 268
15 -15.8002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  17  39LNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFW--------------------------------------------------------------------------------LDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQ-GAQHLNEFTMLNLTELPLEERHQRLEDMARWVLEAAGIREFELVTESS----YGDTVDVMKG-----------------LELASGAMGPHFLDEKWEIFDPWVGLGFGLERLLMIREGTQHVQSSYLDGVRLNIN.................................................................................................................................................................................. 302
16 -10.5003ig2_A mol:protein length:213 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  16  1...........................................................................................................................SNADKSNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYDAEKKNPEKVLAPYSEDYHLGLDENTSVYELKAYVENIFKRLGLDLHSLVVGNLSDDIYSTALTVNTKGGK---------------RLATFGVVTKKMLKAFDVDNEVYYADLNWKELM........................................................................................................................................................................................................ 213
17 -10.4003ica_A mol:protein length:213 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  23  51.............................................................................................................................................................................MNPLSQELCMRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAATDETPLAAYAEDDRLGIEEPTSVFELKAVVEQVLCRVGIETGAYTLKTADNDLYASAMEVKTRSGK---------------LLGTFGTVSTELIKRFEIEQPVYFAELLWDALM........................................................................................................................................................................................................ 213
18 -9.8003l4g_B mol:protein length:589 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  14  388...........................................ANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDI------------------------------------------------------------SATKAVHISNPKT-----------------AEFQVARTTLLPGLLKTIAA-NRKMPLPLKLFEISDIVIKDSNTD-VGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPKGGYVIKASEGPAFFPGRCAEIFA-----------------SVGKLGVLHPDVITKFELTMPCSSLEINIGPFL........................................................................................................................................................................................................ 589
19 -9.0903mey_A mol:protein length:346 Bll0957 protein  ali model follow..  12  18......AVLPNSPDTAPQIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPPVMSRAQLEKSGYLKSF------------------------NLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLS-------------------------------PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTP-FRERWMVRAQAIARDLG---LTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLSEEQPTACMSFNYHREHFGTTWGIQDA--CVAFGMDRLAFHTHGTDLVRDILG.......................................................................................................................................................................................... 325

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.