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Query: 2rhq_A mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMGTELMEKLNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYFYTNDVRFLEQFKAVEDRGELast
1 -131.0002rhq_A mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain  ali model  100  1MGSSSSGLVPRGSHMGTELMEKLNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYFYTNDVRFLEQFKAVEDRGE 288
2 -109.0004p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit  ali model follow..  52  56VGALINVAKEKVQDVLNARKTELEARLAAERIDVTLPGRGQLSGGLHPVTRTLERIEQCFSRIGYEVAEGPEVEDDYHNFEALNIPGHHPARAMHDTFYFNANMLLRTHTSPVQVRTMESQQP--PIRIVCPGRVYRCDS-DLTHSPMFHQVEGLLVDEGVSFADLKGTIEEFLRAFFEKQLEVRFRPSFFPFTEPSAEVDIQCVICSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSNIDPEKFQGFAFGMGAERLAMLRYGVNDLRLFFDNDLRFLGQFR....... 338
3 -106.0003pco_A mol:protein length:327 Phenylalanyl-tRNA synthetase, alpha subunit  ali model follow..  47  56AGAVINEAKEQVQQALNARKAELEARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQ---PPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVM-----------GKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK....... 327
4 -102.0001b70_A mol:protein length:350 PHENYLALANYL-TRNA SYNTHETASE  ali model follow..  41  50RGQELNAIKAALEAALEAREKALEEALERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGLLRTHTSPMQVRYMVAHT--PPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEG----------GKWLELGGAGMVHPKVFQAVDAYREGVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQFKG...... 348
5 -94.2003l4g_A mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  26  180..AFSTSISKQETELSPEMISSGSWRRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGIT--QLRFKPAYNPYTEPSMEVFSYH----------QGLKKWVEVGNSGVFRPEMLLPMGLP-ENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYD....... 489
6 -76.2002du3_A mol:protein length:534 O-phosphoseryl-tRNA synthetase  ali model follow..  20  1MKFDPQKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHIAEVLDVDDITAVKILDEVFPISSTLTLRSHMTTGWFITLSHDKLPLPIKLFSIDRCFRREQEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIP---YPVMNLGLGVERLAMILYGYDDVRKMVYPQIHGEIKLSDLDIAR. 364
7 -74.0005x6c_A mol:protein length:553 O-phosphoserine--tRNA(Cys) ligase  ali model follow..  17  15MRFDIKKVLELAEKDFETAWRETRALIKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIAKALNVSNEMGLKVLETAFPESTTLTLRSHMTSGWFITLSSKKRKLPLKLFSIDRCFRREQEDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTKFKFKPDEKKSKYYTPETQTEVY--------AYHPKLGEWIEVATFGVYSPIALAKYNID---VPVMNLGLGVERLAMIIYGYEDVRAMVYPQFYEYRLSD....... 366
8 -63.7003cmq_A mol:protein length:415 Phenylalanyl-tRNA synthetase, mitochondrial  ali model follow..  27  5..CATQRAPGSVVELLGKSYPQDDHS-NLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAG----LDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF------------HGEWLEVLGCGVMEQQLVNSAGAQDR--IGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQK 315
9 -58.1004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  13  9..DRLEVLLNPKDEISLNSGKPFREESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPL-EYIERMGIDNDTELSKQIFRV--DKNFCLRPMVAPNIFNYARKLDRPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFFQMGSGCTRENLESIITDFLNHLGIDFK--IVGDSCSVYGDTLDVMH-----------------GDLELSSAVVGPIPLDREWGIDKP---WIGAGFGLERLLKVKHDFKNIKRAARSESYY............ 260
10 -53.3004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  12  6.........................SGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGFRELESELLSRRKKDLQQIYAEERENEREITRFFVVDKNFCLRPMLAPNLYNYLRKLDRPDPIKIFEIGPCYRKESDGKEHLEEFTMLSFIQMGSGCTRENLESIITDFLNHLGID--FKIVGDSCMVYGDTLDVM-----------------HGDLELSSAVVGPIPLDREWGIDKP---WIGAGFGLERLLKVKHDFKNIKRAARSESYY............ 278
11 -52.8005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  13  5..TKSQTDRLEVLLNPKDEISLNSGKSELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEY-IERMGIDNDTELSKQIFRV--DKNFCLRPMLAPNLYNYLRKLDRPDPIKIFEIGPCYRKESDGKEHLEEFTMLAFAQMGSGCTRENLESIITDFLNHLGID--FKIVGDSCMVYGDTLDVMH-----------------GDLELSSAVVGPIPLDREWGIDKP---WIGAGFGLERLLKVKHDFKNIKRAARSESYY............ 261
12 -42.0002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  12  6.........................SGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGFRELESELLSRRKKDLQQIYAEERENYLEITRFFVVDKNFCLRPMLAPNLYNYLRKLDRPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGID--FKIVGDSCMVYGDTLDVM-----------------HGDLELSSAVVGPIPLDREWGIDKP---WIGAGFGLERLLKVKHDFKNIKRAARSGSYY............ 278
13 -34.6004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  16  15LLNPKDEISLNSGKPFRELESELLSRRKKDLQQI------YAEERENYLGKLEREITRFFVDRGFLEIKSPILI-----------PLEYIERMGIDNFRVDKNFCLRPMLAPNLANYLRKLDRPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHL-------------------GIDFKIVGDSCMVFGDTLDVMHGDLELSSAVVGPIPLDREWGIDKP----IGAGFGLERLLKVKHDFKNIKRAARS-ESYYNGIS....... 265
14 -34.2004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  16  34..NPKDEISLNSGKPFRELESELLSRRKKDLQQI------YAEERENYLGKLEREITRFFVDRGFLEIKSPILI-----------PLEYIERMGIDNFRVDKNFCLRPMLAPNLGNYLRKLDRPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHL-------------------GIDFKIVGDSCMVFGDTLDVMHGDLELSSAVVGPRPLDREWGIDKP---WIGAGFGLERLLKVKHDFKNIKRAARSES.............. 276
15 -32.8003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  14  31..NPKDEISLNSGKPFRELESELLSRRKKDLQQI------YAEERENYLGKLEREITRFFVDRGFLEIKSPILIPL---IERMGIDNDTELSKQIFR--VDKNFCLRPMLTPNLYNYLRKLDRPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL-------------------GIDFKIVGDSCMVFGDTLDVMHGDLELSSALVGPIPLDREWGIDKP----IGAGFGLERLLKVKHDFKNIKRA-ARSESYYNGIST...... 280
16 -23.1002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  13  39LNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITK-SALAKMTIGEDHPLFSQVFW--LDGKKCLRPMLAPNLYTLWRELERDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEHQRLEDMARWVLEAAGIREFELVTESSVVYGDTVDVM------------------KGDLELASGAMGPHFLDEKWEIFDP---WVGLGFGLERLLMIREGTQHVQSMARS--LSYLDGVRLNIN.. 302
17 -16.5003p8t_A mol:protein length:294 AsnS-like asparaginyl-tRNA synthetase related protein  ali model follow..  16  19.................................................TKILDYMTKFFTDRGFKWLLPIMLSPI----DPLWPDPAGEGIRPAEVDVYGVRMRLTHSMILHKQLAIAMGLE----KIFVLSPNIRLEKDDGRHSYEFTQLD-----EGAKMKDVMRLIEELIYGLFRKAEEWTGRPRARHFKVYDYKDILEEFGSDEKASMEMEEPFWIEVSSGGE---AKIRAAGLKEDSFRPYGAGIGVERLVRFIVGAKHIAEV................... 281
18 -15.9001nnh_A mol:protein length:294 asparaginyl-tRNA synthetase-related peptide  ali model follow..  17  19.................................................TKILEYMTDFFVKEGFKWLLPVIISPI----DPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLK----KIFVLSPNIRLEKDDGRHAYEFTQLDFEVE---AKMEDIMRLIERLVYGLFRKAEEWREFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIEVASGGEREWEYIRKAGLNEDSFRPYGAGIGVERLVRFIVGAKHIAEV................... 281
19 -15.5003l4g_B mol:protein length:589 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  12  318VGIRETP--ENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAF--------FPGRCAEIFARGQ--SVGKLGVLHPDVITKFELT---MPCSSLEINIGPFL............................... 589
20 -14.6003i7f_A mol:protein length:548 Aspartyl-tRNA synthetase  ali model follow..  10  248.................................................SACCGLFREFLTSQKFVEIHTPKLIGC----------SSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFR----KVFEVGPVFRAENSNTRHLTEFEGLD-IEMEIVENYHECIDVMEKLFTFIFDE-LRLTYKEAIEMLRASGETIG-FPAAIRPFYTMPDIDDPNYEITSGAQFLMKRCIEKGVDPATLKDYGCGIGLERITMLYLGIPNIRKV................... 536
21 -14.1005xix_A mol:protein length:472 Asparagine--tRNA ligase, cytoplasmic  ali model follow..  13  124..ELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMS---KILKARSMVTRCFRDHFFDRGYYEVTPPTLVQT----------QVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALG-----DVFCIAQSYRAEQSRTRHLAEYTHVEAECP---LTFDDLLNRLEDLVCDVVDRILKSPAGSIVHPFKRMNYSDAIVWLKEHDVKKEDGTFYEF-EIVGGSMEILAGYKREGIDPTPYYWYGYGLGLERFLTWILNRYHIRDV................... 454
22 -14.1004j15_A mol:protein length:521 Aspartate--tRNA ligase, cytoplasmic  ali model follow..  13  159ISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDLRTST--SGICHLFRETLINKGFVEIQTPKIISA----------ASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFE----KVFSIGPVFRAEDSNTRHLTEFVGLD-MEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYCEALAMLREAGVEMGDEDDL-EILSGAQLLTERALHHGIDLEKIKAYGGGIGLERVTMLFLGLHNVRQT................... 503
23 -13.8004h2w_A mol:protein length:346 Amino acid--[acyl-carrier-protein] ligase 1  ali model follow..  14  1MGSSSSGLVPRGSHMNIAVLPNSPDTAPQIAHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPPVMSRLKSFPNLLGCVCGLHGTERETTSLSPADLVLSPAACYPVYPIAASRPKGGLRFDVAADCFRREP-HLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDGLTFRVDYASDPFFGRAGKMLANNQRDQQLKFEL-SEEQPTACMSFNYHREHFGTTWGINGEPAHTGCVAFGMDRLAVAMFH.......................... 307
24 -13.6003mey_A mol:protein length:346 Bll0957 protein  ali model follow..  17.....IAVLPNSPDTAPQIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPPVMSRLKSFPNLLGCVCGLHGTERETTSLSPADLVLSPAACYPVYPIAASRPKGGLRFDVAADCFRREP-HLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFEL-SEEQPTACMSFNYHREHFGTTWGINGEPAHTGCVAFGMDRLAVAMFH-AKVRDILGLQ............... 327
25 -13.2002xti_A mol:protein length:437 ASPARAGINYL-TRNA SYNTHETASE, CYTOPLASMIC, PUTATIVE  ali model follow..  11  94..KIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAA---ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQT----------QVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLG-----DVFCIAQSYRAEKSRTRHLAEYAHVE-MEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTY-EIVGGSMELSKAFKNVEIDPKPYYWYGYGLGLERFICWLTNTNHIRDV................... 425
26 -13.1003g1z_A mol:protein length:326 Putative lysyl-tRNA synthetase  ali model follow..  15  21.................................................AAIMAEIRRFFADRGVLEVETPCMSQA--HLFPFETRFVGPGHSQGINLYL------MTSPEYHMKRLLAAGCG----PVFQLCRSFRNEEMGRHHNPEFTMLEWYRP--HYDMYRLMNEVDDLLQQVLDCQPAESLQLLFTMGVEPHIGKETFIYHFPASQASLAQIST-FEVYYKGIIDQNLLDALAAGLPDCSGV--ALGVDRLVMLALGAESLADV................... 318
27 -12.8003a5y_A mol:protein length:345 Putative lysyl-tRNA synthetase  ali model follow..  13  3...................SSSSGLVPRGSHMSETASWQPSASPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQA--HLVPFETRFVGPGHSQGMNLWL------MTSPEYHMKRLLVAGCG----PVFQLCRSFRNEEMGRYHNPEFTMLEWYRP--HYDMYRLMNEVDDLLQQVLDCPAAESLQLLFTFGVEPNIGKETFVYHFPASQASLAQIST-FEVYYKGIIDQNLIEALKVGMPDCSGV--ALGVDRLVMLALGAETLAEV................... 331
28 -12.8001asy_A mol:protein length:490 ASPARTYL-tRNA SYNTHETASE  ali model follow..  11  130ISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVT--AGVCELFREYLATKKFTEVHTPKLLGA----------PSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFE----RVYEIGPVFRAENSNTHHMTEFTGLD-MEMAFEEHYHEVLDTLSELFVFIFGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFEILSGAQLLQERMKAHGLSPEDPG--GGGIGLERVVMFYLDLKNIRRA................... 478
29 -12.8003m4p_A mol:protein length:456 Asparaginyl-tRNA synthetase, putative  ali model follow..  12  160.................................................SEIQWYFRKYYHDNHFTEIQPPTIVKT----------QCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASLG-----KSFCMLSSYRAEQSRTVHLAEYLHLEAELP---ISFEDLLNHLEDLVCTVIDNVMRMTYADAIFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMELMGAYKANGLNPDPYYWYGYGLGVERLVMWLLGEDHIRKV................... 444
30 -12.7001b8a_A mol:protein length:438 PROTEIN (ASPARTYL-TRNA SYNTHETASE)  ali model follow..  12  141.................................................SSVFKAVRDFFHENGFIEIHTPKIIAT----------ATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLD----RVYEIAPIFRAEEHNTTHLNEAWSID-SEMAFIEDEEEVMSFLERLVAHAINDILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDID--EISSGGQILVEQIKEKGLNPESFEFYGFGLGAERLIKQMLDLPNIREV................... 426
31 -12.7001e1o_A mol:protein length:504 LYSYL-TRNA SYNTHETASE, HEAT INDUCIBLE  ali model follow..  13  140..TELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNA--------LDLDMYLRIAPELYLKRLVVGGFE----RVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDFDEVAEAHLIQPTFIEAMFYDEDYVTALGLGIGIDRMIMLFTNSHTIRDV................... 494
32 -12.6001bbu_A mol:protein length:504 PROTEIN (LYSYL-TRNA SYNTHETASE)  ali model follow..  14  140..TELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNA--------LDLDMYLRIAPELYLKRLVVGGFE----RVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDFEEVAEAHLIQPTFIEAMFYDEDYVTALGLGIGIDRMVMLFTNSHTIRDV................... 494
33 -12.5003a74_A mol:protein length:493 Lysyl-tRNA synthetase  ali model follow..  14  131..SSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNA--------LDMTLYMRIAIELHLKRLIVGGLE----KVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSFEQKVEDKLIQPTFIEAHEMDEDFLEALGLGIGVDRLVMLLTNSPSIRDV................... 484
34 -12.5004ex5_A mol:protein length:529 Lysine--tRNA ligase  ali model follow..  14  155..TQLRLLAKALRPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNA--------LDMEMFLRIAPELYLKRLIVGGFE----RVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRLMDFTERLIRQAAVDALGTATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSFEETAEAQLWEPTFIEAMFFDADYIRALGCGIGIDRLVMLLTDSPTIRDV................... 513
35 -12.4001x54_A mol:protein length:434 Asparaginyl-tRNA synthetase  ali model follow..  12  139.................................................ETLIMAAREWLLKDGWHEVFPPILVTG----------AVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLE-----KVWSLTPSFRAEKSRTRHLTEFWHLELEAA---MDLWDIMKVEEELVSYMVQRTLELRFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYILEEGMDPKDYEWYGFGLGVERLVAWVLKLDHIRWA................... 422
36 -12.2001wyd_A mol:protein length:429 hypothetical aspartyl-tRNA synthetase  ali model follow..  11  138.................................................SLALKAFRETLYKEGFIEIFTPKIIAS----------ATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVE-----RVFEVAPAWRAEESDTPHLAEFISMDVEMA---ADYNDVMQLLEKILHNIVKKILNYEPPEVKIPIKRLKYTEAIEILRSKGYNIKFGDD-KFLEIVSGSTVLEEALKKKGLKPESFEFFGFGMGLARLMVMLTGIQSVKEI................... 417
37 -12.2004lns_A mol:protein length:351 Asparagine synthetase a  ali model follow..  10  12............................................LQEQILTVKRSFSEALEKLNLVEVRAPILFRVGDGTQDNLSGFEKAV-QVPVKAIPNASFEVVHSLAKWKRRTLANYKFAPGHGLYTHMTALRVDDLDNIHSVVVDQWEMVMKDDQRNLAFLKEVVCKVYAAIRKTELAVCEKPETIQFVHAEHLLLAYPNLTAKEREREIAREY-LEVSSMGILRHQISLTGDDSLLKSEWHGGGIGQSRMVMFMLRKKHIGEVWPEEIRKKHNL........ 350
38 -11.9001n9w_A mol:protein length:422 aspartyl-tRNA synthetase 2  ali model follow..  10  85LSPALEPTPVEIPK--EEWRANPDTLLEYRYVTLRGEKAR---APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRA----------GAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFE-----RVYEVAPVWRMEHHTSRHLNEYLSLD-VEMGFIADEEDLMRLEEALLAEMLEEALNRSVRPFYTYPEEDGTTRSFDLLFRGL------------EITSGGQELLESLKAKGMDPEAFHGYGFAIGAERLTQKLLGLPNVRYA................... 410
39 -11.80011as_A mol:protein length:330 ASPARAGINE SYNTHETASE  ali model follow..  13  8............................................KQRQISFVKSHFSRQLEELGLIEVQAPILSRVGDGTQDNLSGAEKAV-QVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDELSPLHSVYVDQWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQIHFVHSQELLSRYPDLDAKGRE-FELSSMGILKHQLALTGDEDRLELEWHGGGIGQSRLTMLLLQLPHIGQVQAG................ 316
40 -11.7006aqh_A mol:protein length:508 Lysine--tRNA ligase  ali model follow..  14  142......QMAAKALRPLPVAHKEMSEESRVRQRYVDLIVRDQARKVARQRIAVMRAIRSALERRGFLEVETPMLQTLAGGAAARPFVTHSNA--------LDTELYLRIAPELFLKRCLVGGFE----RVFELNRVFRNEGADSTHSPEFVMLETYQAYGTYDAVVTRELIQEVADEAIGTRQVPLPDGTVYDLDGEWESIQMYPSLSEALGEEITPDTPWEHTVGAKLWAPTFVEAMALDEDFLAALGTGMGIDRLMMTLTGIRETVLF................... 496
41 -11.6005eln_A mol:protein length:535 Lysine--tRNA ligase  ali model follow..  17  143..KSVVLLSPCYHMLPTAISGLKDQEVRYRQRYLDLMLNEESRKVFKLRSRAIKYIRNYFDRLGFLEVETPMLNMIYGGAAARPFITYHNE--------LETQLYMRIAPELYLKQLIVGGLD----KVYEIGKNFRNEGIDLTHNPEFTAMEFYMA---ADYYDLMDLTEELISGLVLEPDGPEGKCIEIDFTTPWKRFSFVEEIESGLGEKLKRPLDAGHFVETKCTNPSFIEACPIDETFCLALGWGLGIDRLIMFLADKNNIKEV................... 507
42 -11.5005vl1_A mol:protein length:506 Lysine--tRNA ligase  ali model follow..  14  139......RMAAKALRPLPVAHKEMSEESRVRQRYVDLIVRPQAREVARQRIAVIRAVRNALERRGFLEVETPMLQTLAGGAAARPFVTHSNA--------LDIDLYLRIAPELFLKRCIVGGFD----RVFELNRVFRNEGSDSTHSPEFSMLETYQTYGTYDALITRELIQEVADEAIGTRQLSMPDGSVYDIDGEWATMEMYSSLSEALGEQITPETTWEHAVGNKLTAPTFVEAMQLDEDFLTALGTGMGIDRLLMCLTGIRETVLF................... 492
43 -11.5005hgq_A mol:protein length:524 Lysine--tRNA ligase  ali model follow..  14  135..YEIIQLTPCLHMLPHTHFGLKNQETRYRMRYLDLIMNPDVKNRFVTRSRMISFLRRYLDNLGFLEVETPMMNLIAGGATAKPFITHHND--------LDMDLYLRVAPELYLKMLVVGGID----RVYEIGRVFRNEGIDQTHNPEFTSCEFYMAYADYELMKITEDMLARMVYYMHGTYKIQYHPNIGEFLEPTFISPTFLTGHPQIMSPLAKWHR-FELFVVTKEIVNAYTELNDPLTQRLRFGWGMGIDRLAMILTDSNNIKEV................... 502
44 -11.4003bju_A mol:protein length:521 Lysyl-tRNA synthetase  ali model follow..  14  133..YEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE--------LDMNLYMRIAPELYHKMLVVGGID----RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD--YHDLMEITEKMVSGMVKHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLVGEFLEVTCINPTFIEAMFIDENFCTALGWGMGIDRVAMFLTDSNNIKEV................... 499
45 -11.3006chd_A mol:protein length:597 Lysine--tRNA ligase  ali model follow..  15  220...................LKDKETRYRQRYLDLILNDFVRQKFIIR--SKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE--------LDMNLYMRIAPELYHKMLVVGGID----RVYEIGRQFRNEGIDLTHNPEFTTCEFYMA---ADYHDLMEITEKMVSGMVKHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLVGEFLEVTCINPTFIEAMFIDENFCTALGWGMGIDRVAMFLTDSNNIKEV................... 567
46 -11.1004ycv_A mol:protein length:516 Lysine--tRNA ligase  ali model follow..  16  152...................LKDTEIRYRQRYLDLLINESSRHTFVTR--TKIINFLRNFLNERGFFEVETPMMNLIAGGANARPFITHHND--------LDLDLYLRIATELPLKMLIVGGID----KVYEIGKVFRNEGIDNTHNPEFTSCEFYWA---ADYNDLIKWSEDFFSQLVYHKDGPENQPIEIDFTPPYPKVSIVEEIEKVTNTILPTAAKLLDQLASHFIENKYNEAAQLDSAFCTSLGLGLGIDRITMFLTNKNSIKDV................... 498
47 -10.7001z7m_A mol:protein length:344 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  12  2.................RGSGSIEGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEY----TQLYTALESNGKTFNQEKMF-GQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIELFGESADKSELEILSLALQVIEQLGLNKTVFEI...................................................................................................... 173
48 -10.6003ica_A mol:protein length:213 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  12  1...........................................SNADRRYKWQTVVSEQLVGAGFNEILNNSLTAGSY-YEGLKSHPREMAVELMNPL--QELNCMRQTLLFGGLETLSLRRKHLSLYLFEWGKCYRAKRTDETPLAAYAEDDRLGIEEPTSVFELKAVVEQVLCRVGIETGAYTLKTADNDLYASAMEVKTR---------------SGKLLGTFGTVSTELIKRFEIEQP---VYFAELLWDALM............................... 213
49 -10.6004e51_A mol:protein length:467 Histidine--tRNA ligase  ali model follow..  13  4.........GTLEAQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYS----GENLTLRPENTAAVVRAAIEHNYDGPKRLWYIGPMFRHERPQRGRYRQFHQVEALGFAGPDADAEIVMMCQRLWEDLGLTGIKLEINPKLIDFLNPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYD-PLIEQLG--GKPTAACGWAMGIERILELL............................ 337
50 -10.2003ig2_A mol:protein length:213 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  12  1...........................................SNADKSNKLQNLVAEQLVGCGFNEILNNSLTRAAY-YDGLESYPSKNLVMLLNPL--ADLNCMRQTLLFGGLESIAANRKNADLKFFEFGNCYHFDAEKKNPEKVYSEDYHLGLDENTSVYELKAYVENIFKRLGLDLHSL-------------VVGNLSDDIYSTALTVNTKGGK--RLATFGVVTKKMLKAFDVDNE---VYYADLNWKELM............................... 213
51 -10.0005e3i_A mol:protein length:438 Histidine--tRNA ligase  ali model follow..  14  1..........................MAMSSIVAIKGFNDVLPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRAIGDATDIVEKEMFDKGNPPESLTLRPEGTAGCVRALVEHNRGATPRVWYMGPMFRYEKPQKGRYRQFHQFGVETFGVATPDIDVDHMVQLELNTLGETDERTEYRNALVAFINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDGLVGQLKGKADQSVPAVGFAMGMERLLLLL............................ 322
52 -9.1004up7_A mol:protein length:777 LYSINE--TRNA LIGASE  ali model follow..  13  150...................LGDQETRFRKRYLDLIVNPESVKNFVLR--TKVVKAVRKYLDDKGFLEVETPILNTIPGGATA---PFITHHNQLDIQMYMRIAPEL----------YLKELVVGGINRVYEIGRLFRNEGIDQTHNPEFTTCE-AYADYNDIMKMTEELLGNMVKDITGGSTKLEIKDRLMDINNE............................................................................................ 314
53 -9.0402cim_A mol:protein length:522 SERYL-TRNA SYNTHETASE  ali model follow..  11  220HGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGH----------AKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGENEEIPVKVFDRGTSHRYES-GIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACL-PDGEWLEFQNVSINGDKYPKGFNVSGDELWSGCSGVGLERWAAVFLA.......................... 489

FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 9 6 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24