current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: 4p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .
# Score Template Links and tools%idFirst MENLDALVSQALEAVRHTEDVNALEQIRVHYLGKKGELTQVMKTLGDLPAEERPKVGALINVAKEKVQDVLNARKTELEGAALAARLAAERIDVTLPGRGQLSGGLHPVTRTLERIEQCFSRIGYEVAEGPEVEDDYHNFEALNIPGHHPARAMHDTFYFNANMLLRTHTSPVQVRTMESQQPPIRIVCPGRVYRCDSDLTHSPMFHQVEGLLVDEGVSFADLKGTIEEFLRAFFEKQLEVRFRPSFFPFTEPSAEVDIQCVICSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSNIDPEKFQGFAFGMGAERLAMLRYGVNDLRLFFDNDLRFLGQFRLast
1 -137.0004p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit  ali model  100  1MENLDALVSQALEAVRHTEDVNALEQIRVHYLGKKGELTQVMKTLGDLPAEERPKVGALINVAKEKVQDVLNARKTELEGAALAARLAAERIDVTLPGRGQLSGGLHPVTRTLERIEQCFSRIGYEVAEGPEVEDDYHNFEALNIPGHHPARAMHDTFYFNANMLLRTHTSPVQVRTMESQQPPIRIVCPGRVYRCDSDLTHSPMFHQVEGLLVDEGVSFADLKGTIEEFLRAFFEKQLEVRFRPSFFPFTEPSAEVDIQCVICSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSNIDPEKFQGFAFGMGAERLAMLRYGVNDLRLFFDNDLRFLGQFR 338
2 -131.0003pco_A mol:protein length:327 Phenylalanyl-tRNA synthetase, alpha subunit  ali model follow..  67  1MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDV-----------MGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK 327
3 -121.0001b70_A mol:protein length:350 PHENYLALANYL-TRNA SYNTHETASE  ali model follow..  48  1......MLEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEALERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGELLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWW----------PEGGKWLELGGAGMVHPKVFQAVDAYRERVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQFK 347
4 -119.0002rhq_A mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  53  1............................................MGSSSSGLVPRGSHMGTELMEKLN----------------QQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRQGPVKIICPGKVYRRDSDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYFYTNDVRFLEQFK 281
5 -66.9003cmq_A mol:protein length:415 Phenylalanyl-tRNA synthetase, mitochondrial  ali model follow..  30  2......................................................AAECATQRAPGSVVELLGKSYPQDDHSNL------TRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLV--VGDVYRRDQDSQHYPIFHQLEAVRLFSKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINF------------HGEWLEVLGCGVMEQQLVNSAGAQD--RIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFC 308
6 -64.8002du3_A mol:protein length:534 O-phosphoseryl-tRNA synthetase  ali model follow..  18  3.FDPQKYRELAEKDFEAA-------WKAGKEILAERSPNELYPRVGFSFGKEHP-LFATIQRLREAYLSI-VVNPLIVEDVHVKKQFGREALTLPKPNVGISAEKIRQIEAISKPLQEIFHRYKKGEIDGDDLS--YLIAEVLDVDDITAVKILDEVFPISSTLTLRSHMTTGWFITLDKLPLPIKLFSIDRCFRREQDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIP---YPVMNLGLGVERLAMILYGYDDVRKMVYSDLDIAREIK 367
7 -58.2003l4g_A mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  24  129VDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEV----------TLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDKNLLRTHTTSASARALKKPFTPVKYFSIDRVFRNETDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKL----TQLRFKPAYNPYTEPSMEVFSYHQGLK----------KWVEVGNSGVFRPEMLLPMGL-PENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYD 489
8 -52.5002du7_A mol:protein length:549 O-phosphoseryl-tRNA synthetase  ali model follow..  23  2.....................................................KLKHKRDDKMRFDIKKVLELAEKDFETAETRALIKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIV-DEMEIYKQFGPEAMAVLD--RCFYLAGTLTLRSHMTSGWFITLKKRKLPLKLFSIDRCFRREQDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTKFKFKPDEKKSKYYTPETQTEVYAYHPKLGE--------WIEVATFGVYSPIALAKYNID---VPVMNLGLGVERLAMIIYGYEDVRAFYEYRLSDRDIAG 367
9 -50.3004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  14  1...............................MGSSSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELSRRKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEY-IERMGIDNDTELSK--QIFRVDKNFCLRPMLAPNLGNYLRKLPDPIKIFEIGPCYRKESGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGID--FKIVGDSCMVFGDTLDVMH-----------------GDLELSSAVVGPRPLDREWGIDKP---WIGAGFGLERLLKVKHDFKNIKRAARSES-YYNGIS 282
10 -45.9004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  15  11...........................RGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESE-------------LLSRRKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILI-----------PLEYIERMGIDNFRVDKNFCLRPMLAPNLYNYLRKLPDPIKIFEIGPCYRKESGKEHLEEFTMLSFIQMGSGCTRENLESIITDFLNHLGID--FKIVGDSCMVYGDTLDVMH-----------------GDLELSSAVVGPIPLDREWGID---KPWIGAGFGLERLLKVKHDFKNIKRAARSESYY..... 278
11 -44.1004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  15  1.................................................PALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELSRRKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEY-IERMGIDNDTELSK--QIFRVDKNFCLRPMVAPNIFNYARKLPDPIKIFEIGPCYRKESGKEHLEEFTMLNFFQMGSGCTRENLESIITDFLNHLGIDFK--IVGDSCSVYGD---TLDVM--------------HGDLELSSAVVGPIPLDREWGID---KPWIGAGFGLERLLKVKHDFKNIKRAARSESYY..... 260
12 -44.0002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  15  11...........................RGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESEL-------------LSRRKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILI-----------PLEYIERMGIDNFRVDKNFCLRPMLAPNLYNYLRKLPDPIKIFEIGPCYRKESGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDF--KIVGDSCMVYGDTLDVMH-----------------GDLELSSAVVGPIPLDREWGIDK---PWIGAGFGLERLLKVKHDFKNIKRAARSGSYY..... 278
13 -27.9003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  18  2..................................KGGLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAE-----ERENYLGKLEREITRFFVDRGFLEIKSPILI-----------PLEYIERMGIDNFRVDKNFCLRPMLTPNLYNYLRKLPDPIKIFEIGPCYRKESGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL----DFKIVGDSCMVFGDTLDVM-----------------HGDLELSSALVGPIPLDREWGIDKPW---IGAGFGLERLLKVKHDFKNIKRAARSESYY..... 275
14 -26.8004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  18  6......................................KSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEER-------------------ENYLGKLEREITRFFVDRGFLEIKSPILI-----------PLEYIERMGIDNFRVDKNFCLRPMLAPNLANYLRKLPDPIKIFEIGPCYRKESGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHL----DFKIVGDSCMVFGDTLDVMH-----------------GDLELSSAVVGPIPLDREWGIDKPW---IGAGFGLERLLKVKHDFKNIKRAARSESYY..... 261
15 -11.7002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  14  11...........................RGSHMFLTRRDPPLSSFWTKVQYQRLKELNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLRTVKHRPA-----LLELEEKLAKALHQQGFVQVVTPTII----TKSALAKMTIGEDHPLFSQVFLDGKKCLRPMLAPLWRELERLWDKPIRIFEIGTCYRKEQGAQHLNEFTMLNLTELPLEERHQRLEDMARWVLEAAGIREFELVTESS----VVYGDTVDVMKGDLE---------------LASGAMGPHFLDEKWEIFDPWVGLGFGL--ERLLMIREGTQHVQLSYLDGVRL..... 299
16 -9.9603l4g_B mol:protein length:589 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  11  316.............................KKVGIRETPENLAKLLTRMYIGDGNQIEIEIPPTRADIIHACD-------VEDAAIAYGYNNIQMTLP-KTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANR-PLKLFEISDIVIKDSNTVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL-GYVIKASEGPAFFP----------------GRCAEIFARGQSVGKLG--VLHPDVITKFELTMPCS---SLEINIGPF......................... 588

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 5 2 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.