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Query: 3lvz_A mol:protein length:294 Blr6230 protein, from PDB0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRLTAALCALTLLSTGAQAQTIKDFLAVAMKKWTAPFEPFQLIDNIYYVGTDGIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAMKIDVLLGPHPEVYGMQAKRAEMKDGAPNPFIKPGELVTYATSLSEDFDKQLAKQTAALEKKLast
1 -7.760 VFG001354(gi:15900810) (pce) choline binding protein E [CBPs (VF0145)] [Streptococcus pneumoniae TIGR4]  ali follow..  11  1MKKKLTSLALVGAFLGLSWYGNVQAQESSG--------------NKIHFINVQEGGSIILESNGHFAMVDTGEDVLTDRVFRRLKELGV--QKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKSERLWDNLYGYDKVLQTAAEKGVSVIQNITQGDAHFQFGDMDIQLYNY--DSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMKF.............................................................. 251
2 -5.280 VFG000073(gi:16802247) (plcA) phosphatidylinositol-specific phospholipase c [PlcA (VF0063)] [Listeria monocytogenes EGD-e]  ali follow..  11  6LQRTLVLLLCFILYFFTFPLGGKAIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSY--NGDITWTLTKPLAQTQTMSLYQQLEA-GIRYIDIRALNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFG------MQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLN-----------HISATSLTFTP-------RQYAAALNNKVEQFVLNLTSEKVRG 293
3 -5.250 VFG000701(gi:30962649) (bsc2) polysaccharide biosynthesis protein Bsc2 [Capsule (VF0043)] [Haemophilus influenzae str. 1007]  ali follow..  10  69..........................................................LDALKEGVIFYPFNAQSNCRAV---------ANRNLTHIFITHGESNKITSVKPIVRIYDHVITAGNAGIDRLIAHK--------------------IFSQYDVEAGRIIPMGDTFIGKT--------GLDHTGKGIPAIFYVPTWEGGIEQENYSSLSYVGQVTNTLLLLSKH-INEIVIRPHPNTGHRLQNYHQFLMDIVKTLLHKG........................... 241
4 -5.160 VFG045590(gi:52842834) (lpg2628) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  10  40....VMLFVVLIVLLAMSTGWLPSYLTYQLESRYPIVKRVNPNVKWVVVLGGGQNGVRLFRTLPDAKLLLSG-QSEALLLTELAKWFAIDSEKVPFYLVTSAI--HMPRSMALCQQQGLHPIAAPTD....................................................................................................................................................................... 209
5 -4.990 VFG001954(gi:15792744) (Cj1426c) methyltransferase family protein [Capsule (VF0323)] [Campylobacter jejuni subsp. jejuni NCTC 11168]  ali follow..  11  103..............................................................GYRPVCIDCGG--------------------------------HAGLITDIILHCGGQSYIFEPNIYLNY------------------FLRKKYENNINVKLFQKAV------SDRNYETDFIMFGNRILSQGNRIVESVQDSQTEKTYKVQVID-IENEILTQHKRIYFLKLDI----EGMEFEIMKKIIEKKIYKKIDYIACETHEYMFDDSEKKIGELKQ......... 268
6 -4.870 VFG013342(gi:30995400) (lpsA) glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]  ali follow..  10  13.......................................PTFYLFGLLIMHNAAQHNYVISLTTE--------QKRRKHITEEFGKQNIPFEFFDAI-LSDGELSHIVLWDLALENNLNYINIFEDDIHLGENAKE-------------LEIDYISDDIHVLKLEANGKMFFKQPKSVKCDRNVYPMTVKQSGCAGYTVT----------------AKGAKYLLELVKNKPDVAVDSLV------FEDFLHFKDYKIVQLSPGI----VQDFVLHPDNPFESSLQEGRDRVHGN 249
7 -4.860 VFG013321(gi:16272676) (lpxH) UDP-2,3-diacylglucosamine pyrophosphohydrolase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]  ali follow..  13  36.......................................................RLYILGDLFDFWIGDDEQSALIQQVKDLIKFVSDQGVQCYFQ---HGNRDFLIG-ERFSKETGAQLLPDYQLITLYDKK-------------------ILLCHGDTLCIDDEAYQQFRRRVHQKWLQRLFLCLPLKVRVIIAEKIRAKSNQDKQAKSQEIMDVNQAFTAEKVQE----GVNLLIHGHTHREAIHQQEEFTR...................................... 210
8 -4.790 VFG000078(gi:16804596) (ami) autolysin amidase, adhesin [Ami (VF0071)] [Listeria monocytogenes EGD-e]  ali follow..  11  1MKKLVKSAVVFASLVFIGTSATMITEKASAASI-QKVDGQATYIPKGVRDGTATEEHDGFEDGTNSVLQQVPLLRGYPDVNAYIKSNKFSTAKIEKQLKSQ-KFNYRNGYGKPE------IVIHETANN---SSTITGEINYMSTNYNNAFVHAFVDKSRIIQIHPTENGVWGA-GQYANARFIQVELVRS--------------------------KTFDEFARSINNYAYYAAYLL........................................................ 209
9 -4.770 VFG007031(gi:28901169) (tdh) thermostable direct hemolysin A [TDH (VF0517)] [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  15..............................................................................SMLAAFKTFAFELPSVPF---APGSDEILFVVRDTTFNTNAPVNVEVSDFWTNRNVKRKPYKDVYGQSVFTTSGTKWLTSYMTVNINDKDYTMAAVSGYKHGHSAVFVKSDQVQLQHSYDSVANFVGEDEDSIPSKMYLDETPEYFVNVEAYESGSGNILV....................................................... 173
10 -4.760 VFG000878(gi:26251207) (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]  ali follow..  12  1MKWRKRGYLLAAMLAFASATIQAAD-------------------VTITVNGKVVAKPCTVSTTNATVLMSAGAASAWHDVALELTNCPVGTSRVT--ASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFP--RALTVNGGATQGTIQAVISITYTYS.................................................................................................................... 167

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.