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Query: 4glv_B mol:protein length:107 OBody AM3L09, from PDB1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst VSPKKTHWTAEITPNLHGSEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLERGKTPDHLFKVFAELSREDVVVIKGIVEATTVTRWDTGVEIFPSEIWILNKALast
1 -37.400[J] COG0173 Aspartyl-tRNA synthetase  ali follow..  27  2....RTNYCGLISEQYLDQTVTVKGWVHRRRDHGGVIFIDLRDREGIVQVVIDPDT----PEAFAAADSSRNEYVLSITGRVRNRPEGTTSGKIEILAKEIEVLNAA 105
2 -34.800[J] KOG0556 Aspartyl-tRNA synthetase  ali follow..  16  95........ISDISAKNDGQTVLLRARVYTSRLQGKMCFFSLRQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSQDAEIHISSIYVISPI 197
3 -31.500[J] COG0017 Aspartyl/asparaginyl-tRNA synthetases  ali follow..  16  9.............KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVV--VKSEVDEEVFKLAKEIAQESSLYVTGTITEDNRSD--LGYEMQVKSIEVISEA 98
4 -30.300[J] KOG0555 Asparaginyl-tRNA synthetase  ali follow..  19  117.............VQHRDQRVSIKAWVHRLRRQGKLMFLVLRDGYGFLQCVLNDKLCQS-----YDAVTLSTETSVQVYGIIKALPDGKAPDGHELTVDYWEVIGKA 207
5 -28.400[J] KOG0554 Asparaginyl-tRNA synthetase (mitochondrial)  ali follow..  16  88..FRKKLRIAEVKLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLLQCVMTSD---AEGYDQVESGSILTGASVSVQGTIVASQGTKQ--KVELKVEKIIVVGEC 195
6 -19.200[J] COG1190 Lysyl-tRNA synthetase (class II)  ali follow..  18  40..FRRENLSDQLHAEFLNIDVTVAGRMMTRRIMGKASFVTLQDVGGRIQLYVSRDDLP-EGVYNEEFKKWDLGDILGARGKLFKTKTGELS----IHCSELRLLTKA 149
7 -18.300[J] KOG1885 Lysyl-tRNA synthetase (class II)  ali follow..  15  99..FHVDISLTDFIQKYTDITLKVAGRIHAKRASGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELS----IIPYEITLLSPC 209
8 -14.700[S] COG3111 Uncharacterized conserved protein  ali follow..  19  48.......TVESAKSLRDDTWVTLRGNIVERISDDLYVF---KDASGTINVDIDHKRWN---------VTVTPKDTVEIQGEV-----DKDWNSVEIDVKQIRKVNP. 130
9 -14.000[S] COG3390 Uncharacterized protein conserved in archaea  ali follow..  17  45..................NRIFIVGTLIEKEDIGTYWRGRVSDPTGSFLVYAGQYQ----PEAAQFLEECELPAFVAVIGKTSTYTTDDGNVLTSIRPESIQQVDEL 132
10 -13.200[L] COG5235 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  13  67..................HHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKGNDDSSGKGYGSQVAQQFEIGGYVKVFGALKEFGGKK-----NIQYAVIKPIDS. 159
11 -11.700[L] KOG3108 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  12  63..................RTIHTVGVILEKSYEDGKTTYTLHDPEDTAKIFAVQFGNYNDGGSKFVSPGLEEDTRVRLMGKLKNVAGNK-----MILIYYLQKLA.. 145
12 -9.000[S] COG3689 Predicted membrane protein  ali follow..  173.............DEFEGKTIQFTGFVYNDPSHANSQFL-----FRFGIIHCIADSGVYGLLTKGNTRQYENNTWITAKGKLVNHYHKELKQNL-LEIDSFTKVDK. 261

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.