current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: 4gn3_B mol:protein length:113 OBody AM1L10, from PDB1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst AMGSVYPKKTHWTAEITPNLHGTEVVVAGWVASLGDYGRVKIVKVSDREGGAAVSVYLEYGKTPDHLFKVFAELSREDVVVIKGIVEASKAAADMHNGVEIFPSEIWILNKAKLast
1 -38.300[J] COG0173 Aspartyl-tRNA synthetase  ali follow..  28  2........RTNYCGLISEQYLDQTVTVKGWVHRRRDHGGVIFIDLRDREGIVQVVIDPDT----PEAFAAADSSRNEYVLSITGRVRNRPENDKMISGIEILAKEIEVLNAAA 106
2 -34.600[J] KOG0556 Aspartyl-tRNA synthetase  ali follow..  17  95............ISDISAKNDGQTVLLRARVYTSRLQGKMCFFSLRQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSATDAEIHISSIYVISPIK 198
3 -32.800[J] KOG0555 Asparaginyl-tRNA synthetase  ali follow..  19  117.................VQHRDQRVSIKAWVHRLRRQGKLMFLVLRDGYGFLQCVLNDKLCQS-----YDAVTLSTETSVQVYGIIKALPDGKSAPDGHELTVDYWEVIGKAP 208
4 -32.300[J] COG0017 Aspartyl/asparaginyl-tRNA synthetases  ali follow..  16  9.................KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVVVKS--EVDEEVFKLAKEIAQESSLYVTGTITEDNRSDL---GYEMQVKSIEVISEAH 99
5 -27.800[J] KOG0554 Asparaginyl-tRNA synthetase (mitochondrial)  ali follow..  16  89.......RKKLRIAEVKLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLLQCVMTSD---AEGYDQVESGSILTGASVSVQGTIVASQGTKQ---KVELKVEKIIVVGECD 196
6 -16.400[J] COG1190 Lysyl-tRNA synthetase (class II)  ali follow..  18  41.......RRENLSDQLHAEALNIDVTVAGRMMTRRIMGKASFVTLQDVGGRIQLYVSRDDLP-EGVYNEEFKKWDLGDILGARGKLFKTKTGE-----LSIHCSELRLLTKA. 149
7 -15.700[J] KOG1885 Lysyl-tRNA synthetase (class II)  ali follow..  15  100.......HVDISLTDFIQKYTDITLKVAGRIHAKRASGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGE-----LSIIPYEITLLSPC. 209
8 -13.900[S] COG3111 Uncharacterized conserved protein  ali follow..  20  48...........TVESAKSLRDDTWVTLRGNIVERISDDLYVF---KDASGTINVDIDHKRWN---------VTVTPKDTVEIQGEVDKD-------NSVEIDVKQIRKVNP.. 130
9 -12.200[L] COG5235 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  13  67......................HHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKGNDDSSGKGYGSQVAQQFEIGGYVKVFGALKEFGGKK------NIQYAVIKPIDSFN 161
10 -11.300[L] KOG3108 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  10  63......................RTIHTVGVILEKSYEDGKTTYTLHDPEDTAKIFAVQFGNYNDGGSKFVSPGLEEDTRVRLMGKLKNVAGNKMILI--EYEIFKLETQ.... 158
11 -11.200[S] COG3390 Uncharacterized protein conserved in archaea  ali follow..  16  45......................NRIFIVGTLIEKEDIGTYWRGRVSDPTGSFLVYA-----QYQPEAAQFLEECELPAFVAVIGKTST--TTDDGNVLTSIRPESIQQVDELT 133
12 -10.700[S] COG3689 Predicted membrane protein  ali follow..  159...ENYMEVMEAIYDYPDEFEGKTIQFTGFVYNDPSHANSQFLF------FGIIHCIADSGVYGLLTKGNTRQYENNTWITAKGKLVNHYHKELKQNLPTLEIDSFTKVDKPE 263
13 -9.300[S] COG3495 Uncharacterized protein conserved in bacteria  ali follow..  11  78.............AKTVASLDGKAIRLGGYPVPLENDAKTEFFLVPYPGACIHVPPPPPNQIVLVRYPQGLKLTDIYTPLWVSGTLKIEQVSNDLDAAYAIDKARVKVVEEAD 181

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 2 1 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH,Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, HeymannB, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B,Saibil H, Schwede T, Standley DM, Westbrook JD. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug;14(8):1211-7.