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Query: 4gn3_B mol:protein length:113 OBody AM1L10, from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst AMGSVYPKKTHWTAEITPNLHGTEVVVAGWVASLGDYGRVKIVKVSDREGGAAVSVYLEYGKTPDHLFKVFAELSREDVVVIKGIVEASKAAADMHNGVEIFPSEIWILNKAKLast
1 -41.000IDP05303 gene: aspS; aspartyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1685 [Staphylococcus aureus subsp. aureus COL]  ali follow..  25  1.....MSKRTTYCGLVTEAFLGQEITLKGWVNNRRDLGGLIFVDLRDREGIVQVVFNPAF---SEEALKIAETVRSEYVVEVQGTVTKRDPNPKIKTGVEVQVTNIKVINKSE 109
2 -40.500IDP04615 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4297 [Bacillus anthracis str. Sterne]  ali follow..  25  1.....MAERTHACGKVTVEAVGQTVQLKGWVQKRRDLGGLIFIDLRDRTGIVQVVFNPET---SKEALEVAETIRSEYVLHVEGTVVERGENDNMATGIEVQATKVSVLNAAK 109
3 -40.100IDP05234 gene: aspS; aspartyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1519 [Listeria monocytogenes EGD-e]  ali follow..  31  1.....MEKRTSYCGELNEAHIGQSVVLHGWVQKRRDLGGLIFIDLRDREGIVQVVFNPEF---SKEALEIADSVRNEFVVTIKGTVHARGENEKLATGVEVLAEEITILNTSK 109
4 -39.100IDP90878 gene: aspS; aspartyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC1166 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  26  2........RSHYCGHLNKSLVGQTVELCGWVNRRRDLGGLIFIDMRDREGIVQVVVDPDM----ADVFAVANQLRSEFCIKLTGEVRARPENKEMATGVELLARSLEIINRSD 106
5 -39.000IDP90838 gene: aspS; aspartyl-tRNA synthetase [Yersinia pestis CO92] YPO2053 [Yersinia pestis CO92]  ali follow..  28  2........RTEYCGQLNLSHVGQSVTLCGWVNRRRDLGGLIFIDMRDREGIVQVFFDPD----HKAAFEQASELRNEFCIQITGTVRARPDNKDMSTGVEIFANTLNIINRSE 106
6 -38.700IDP90630 gene: aspS; aspartyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0640c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  20  2........RSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGIIQLVCDPND---SKEAHEIASNARNEFVLITEGTIRPRGENPKLKTGIEVVVSKLTIENESA 107
7 -32.600IDP05239 gene: ansB; asparaginyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1896 [Listeria monocytogenes EGD-e]  ali follow..  18  9.................SEFVGKEVTIGAWLANKRSSGKIAFLQLRDGTGFMQGVVVKA--EVGDDIFATAKALTQETSLYVTGTINEDTRSPF---GYEMAVSSVEVISESH 99
8 -32.300IDP05209 gene: asnC; asparaginyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1494 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  9.................KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVVVKS--EVDEEVFKLAKEITQESSLYVTGTITEDNRSDL---GYEMQVKSIEVISEAH 99
9 -31.300IDP05333 aspartyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS2031 [Bacillus anthracis str. Sterne]  ali follow..  27  6........KRSLTKEC-TEKSGKVVSLQGWVKKIRHLGNVSFLLLRDRTGVIQCVLENE---------FAGFKVDVESIVHVIGEIVETSKTEL---GVEVLAHEVKILNGAE 97
10 -29.500IDP05569 asparaginyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4454 [Bacillus anthracis str. Sterne]  ali follow..  22  2........ENTLVKSLTDKYAGQTVQVSGWIRNLRDSKAFGFIELNDGSFFKSVQIVFDT---ELDNFKEIAKLPLSSSVKVEGKVIATPGAKQ---PFEIKAEKIDIEGLSD 103
11 -27.800IDP90728 gene: asnC; asparaginyl-tRNA synthetase [Yersinia pestis CO92] YPO1412 [Yersinia pestis CO92]  ali follow..  20  2........SVVPVVDVGRAAVGSEVTVRGWVRTRRDSAGISFVAVYDGSCFDPLQAVVN--NTLPNYQDEVLHLTTGCSVEVTGTVVASPGEG---QSFEIQATAINVVGWVD 104
12 -27.500IDP90531 RecName: Full=Asparaginyl-tRNA synthetase; AltName: Full=Asparagine--tRNA ligase; Short=AsnRS Q9KSF9 [Vibrio cholerae]  ali follow..  15  12................GKLAVDSEVTVRGWIRTRRDSAGISFLAIYDGSCFNPIQAVVP--NNLNNYDNEVLKLTTGCSVEVTGKIVESPASGQ---AFELAASDVKVVGWVE 104
13 -18.100IDP90947 gene: lysS; lysyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] SAR0518 [Staphylococcus aureus subsp. aureus MRSA252]  ali follow..  17  50.............EELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYV--RKDQVGDDEFDLWKNADLGDIVGVEGVMFKTNTGE-----LSVKAKKFTLLTKS. 141
14 -17.600IDP06319 gene: lysS; lysyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] NP_345214 [Streptococcus pneumoniae TIGR4]  ali follow..  20  50................QLHDKNETATIAGRLITKRGKGKVGFAHLQDREGQIQIYV--RKDAVGEENYEIFKKADLGDFLGVEGEVMRTDMGE-----LSIKATHITHLSKA. 138
15 -17.400IDP04576 lysyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS0076 [Bacillus anthracis str. Sterne]  ali follow..  17  36.......ERTNATNDLLSLEKEISVSIAGRIMTKRGKGKAGFAHIQDLHGQVQIYV--RKDAVGDEEYELFKTADLGDLVGIEGKVFKTNVGE-----LSVKATGFTLLTKS. 143
16 -17.200IDP06134 gene: lysS; lysyl-tRNA synthetase [Helicobacter pylori J99] NP_222891 [Helicobacter pylori J99]  ali follow..  24  50................EPKDKEKCESVVGRVKLLRLMGKACFIKIEDESAILQAYV--SQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGE-----LSIHALEFHILSKT. 138
17 -17.200IDP02443 gene: lysS; lysyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo0228 [Listeria monocytogenes EGD-e]  ali follow..  19  36.......IRSISPEEIETKEAAIEVSVAGRIMTKRVKGKVGFTHIQDRFHQLQIYI--RKDAIGEDAYAVFKLADLGDIIGIKGTIFRTNTGE-----LSVKATEFTLLSKS. 143
18 -16.400IDP90637 gene: lysS; lysyl-tRNA synthetase [Yersinia pestis CO92] YPO0888 [Yersinia pestis CO92]  ali follow..  18  41.......RRENLSDQLHAEALNIDVTVAGRMMTRRIMGKASFVTLQDVGGRIQLYVSRDDLP-EGVYNEEFKKWDLGDILGARGKLFKTKTGE-----LSIHCSELRLLTKA. 149
19 -16.200IDP90685 gene: lysS; lysyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0401 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  18  50................EKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVG-EELYTILKKNLEVGDIVLVKGFPFVTKTGE-----FSLHASEVKLATKA. 139
20 -11.700IDP90889 gene: lysS; lysyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str. N16961] VC0664 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  67................ELEALNHVVSIAGRVMAKRGP----FLVIQETSGRIQAYASKEVQ---QELKDKYQGLDIGDIIGVQGALHKSGKGD-----LYVNMEQFQLLTKA. 150

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 2 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH,Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, HeymannB, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B,Saibil H, Schwede T, Standley DM, Westbrook JD. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug;14(8):1211-7.